Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3270 ATGGTGCATGAAGTGATCCTAACTGGTTCTAGGGACGGCCCCATGATAGCATTTGAGGCTTCCACAGGCGCCATTCTCGCTCAGTTCACCGGAAGTCGATCACCTTGTCGCGGCTTCACGGTGACAGGAAAAGAACTCATTGCAACTTCCCATGTGTCTTCAGACAAAGGTCCAGGCTCAATCCACATCTACAATTGGGGCACTCCAACAATCTTCCAAAACATCTCACTCCCTGAATCTATCACTCCACTTACAGCCAATTCGGATGGTGATTTTCTCTTTGCAGGTGGCGTGTCGGGAAGTATCCACTCCATGTCACTTCCTTCAGGAGATATCATCAACTCATTTACTCCTTACTCAAAACCTGTTTCTAGCCTCCACCTTAGTAATGATGGGTCACTACTGATTTTAGGTTATAATGATGGCATTATTGTTGTGATCCCATCTTTTATGCTTATGGATGGTCCATCTTCATGTAGTGACCCAATCTCACAAAAATGGAAGGCACATTCTGATTCAGTGACATGTTTTAAAACTGGAATTGGGATTCATACTTGTACGTTTGTTTCATGTTCGATGGACTGCACATGTAAGTTTTGGAGTTTATCAAACGGGATAACTCTAATTCGAACTGTGACATTTCCATGTTCCATTTTTGGGTTTGTTATGGATTTAACAGAGTTGGGTTTTTATGCTGCTGGTTCAGATGGGTTTATTTATAAAGGGTTAATGAAGGTTGGGAGCATAAAAATGTTGGAAAACAGAAAAGGTTATGAATTGGTCGATTGGGGTAGTAAAACAAAAAACCATGATGGGCCAATTGTGTCTTTAGTTTTGGTGAATAACGGGAGAAATTTGGTGTCTGCTTCAAAAAATGGGAGTGTTTGGATGTGGGATGTTGAGGGAGGTGAAATCATTATGATTTTTGGGAATGCTCAAATATTGGGAAGCATTAGTGATATGATAATGGTTAAAGGGACTAATACTATAGAGAAAAATGAGGGTGGTAAAGGTGTTAATAGTGGTTTAATTAGTTCTTCTAGGTTATGTGATGAAGAGTTGATTAGGACTTGGATGAAAATTAAAGAGCTTGAAAATGTGATGGATGTGGCTCTTCATGATCAAGGAAGAGCCATTGATATGCTTGAATCTACAATTGCATCTTATGAGAGGCTATTGAAACTTATTCTTAGGGAAGTTACCAAAGCCATTGAAGAGGCAGATCTTGAAGATGAAGGAAATGATAATAAAGGGGAAAAGGATTCGAATGAAGATGTAAACTAG 1284 0.3972 MVHEVILTGSRDGPMIAFEASTGAILAQFTGSRSPCRGFTVTGKELIATSHVSSDKGPGSIHIYNWGTPTIFQNISLPESITPLTANSDGDFLFAGGVSGSIHSMSLPSGDIINSFTPYSKPVSSLHLSNDGSLLILGYNDGIIVVIPSFMLMDGPSSCSDPISQKWKAHSDSVTCFKTGIGIHTCTFVSCSMDCTCKFWSLSNGITLIRTVTFPCSIFGFVMDLTELGFYAAGSDGFIYKGLMKVGSIKMLENRKGYELVDWGSKTKNHDGPIVSLVLVNNGRNLVSASKNGSVWMWDVEGGEIIMIFGNAQILGSISDMIMVKGTNTIEKNEGGKGVNSGLISSSRLCDEELIRTWMKIKELENVMDVALHDQGRAIDMLESTIASYERLLKLILREVTKAIEEADLEDEGNDNKGEKDSNEDVN* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3270 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Psa4g3270 427 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Psa4g3270 427 SMART WD40_4 109 148 IPR001680 GO:0005515
Psa4g3270 427 SMART WD40_4 261 299 IPR001680 GO:0005515
Psa4g3270 427 SMART WD40_4 160 201 IPR001680 GO:0005515
Psa4g3270 427 SMART WD40_4 22 65 IPR001680 GO:0005515
Psa4g3270 427 MobiDBLite consensus disorder prediction 407 427 - -
Psa4g3270 427 PANTHER OS09G0477800 PROTEIN 3 411 - -
Psa4g3270 427 Gene3D - 159 330 IPR015943 GO:0005515
Psa4g3270 427 Gene3D - 3 158 IPR015943 GO:0005515
Psa4g3270 427 PANTHER WD-REPEAT PROTEIN 18 3 411 IPR045227 -
Psa4g3270 427 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 304 IPR011047 -
Psa4g3270 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 301 - -
Psa4g3270 427 Coils Coil 379 406 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3270 91 301 U-box Gene Family AT1G04510 25.688 5.40e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3270 K14829 - gmx:100785191 410.994