Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3268 ATGTCCTTGCTCTGTGCTTCACCATCCGTCTCCTTCCCTTCATCTTCACTCACTTCTCACAAAAATGCAACCGCTAAATCTTCCTTTGTTGGTTCCCAATTGCCTCTTCCAACCCTTTCATTGTCATCTTCTTCTTCAATTCGTACTACCCATTTCTCTTCATCTTTCGTTGTCCGTTCTCAACAGGACACTTCCGTGGTAGAACAAGATCCACGATTCATCTGTGTTGAACCTGAGCCCCGATTTCAAGGCCCGGACATTTGGAACACGACGTGGTATCCAAAAGCTTCGGATCATGTCAACACAGCAAAAACATGGTATATTGTTGATGCTGAAGATAAAATTCTTGGAAGACTAGCATCCACAATTGCCAATCACATCCGAGGCAAAAATCTAGTGACTTATACACCTAGTGTGGACATGGGTGCATTTGTCATTGTGATAAATGCCGAAAAGGTTGCTGTGAGTGGGAAGAAGAGGACACAAAAGCTTTATCGAAGGCACTCAGGTCGACCTGGTGGTATGACAGTCGAGACATTTGATCAGCTGCAGAAAAGAATTCCTGAAAGAATTGTTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGCAGGCTTGGTAGGACACTATTCACACGCCTGAAAGTTTATAGCGGCCCAGAACATCCACATGAGGCGCAGCAGCCGATTGATTTGCCACTTCAGGATAAGAGAATACAGTTGCAGAGATGA 729 0.4486 MSLLCASPSVSFPSSSLTSHKNATAKSSFVGSQLPLPTLSLSSSSSIRTTHFSSSFVVRSQQDTSVVEQDPRFICVEPEPRFQGPDIWNTTWYPKASDHVNTAKTWYIVDAEDKILGRLASTIANHIRGKNLVTYTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQKRIPERIVEHAVRGMLPKGRLGRTLFTRLKVYSGPEHPHEAQQPIDLPLQDKRIQLQR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3268 242 ProSitePatterns Ribosomal protein L13 signature. 196 218 IPR023563 GO:0003735|GO:0005840|GO:0006412
Psa4g3268 242 PANTHER RIBOSOMAL PROTEIN L13 59 242 IPR005822 GO:0003735|GO:0005840|GO:0006412
Psa4g3268 242 PANTHER BNAA02G18970D PROTEIN 59 242 - -
Psa4g3268 242 SUPERFAMILY Ribosomal protein L13 101 233 IPR036899 GO:0003735|GO:0005840|GO:0006412
Psa4g3268 242 Hamap 50S ribosomal protein L13 [rplM]. 106 241 IPR005822 GO:0003735|GO:0005840|GO:0006412
Psa4g3268 242 TIGRFAM rplM_bact: ribosomal protein uL13 100 231 IPR005823 GO:0003735|GO:0005840|GO:0006412
Psa4g3268 242 Gene3D Ribosomal protein L13 95 238 IPR036899 GO:0003735|GO:0005840|GO:0006412
Psa4g3268 242 CDD Ribosomal_L13 106 219 IPR005822 GO:0003735|GO:0005840|GO:0006412
Psa4g3268 242 Pfam Ribosomal protein L13 104 222 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3268 108 241 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 30.370 2.92e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3268 K02871 - gmx:100305981 335.109