Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3220 ATGGCTGATCGTCAGAAAACTGGTCTTGGCGACAGTAGGGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGTTCATATCTGCTAAAGTATGGGCGAAGAGGGAAGCCAAAGTTCTGCCCTTTTAAGCTTTCCAATGATGAGTCTCTACTCATATGGTACTCTGGCAAGGAAGAAAAACAAATTAGGCTCAGTACCGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGACCAGAAAAGGAGTATCAGTCATTCTCTCTTATATACAATGATAGGTCCTTGGATTTGATCTGCAAAGACAAAGATGAAGCCGAAATTTGGTTTGCTGGTCTGAAAGCATTAATTACCCGTGGTAACTATCGCAAGTGGGGATATGAATCAAGACCTGAAAGTCTGTATTCTGATAGTCCAAAGTCTGGCACAAGAAGATCCATTCCATCATTTGCACCATTTGATCCCAGAGATATCGACAGAGTTTCTTTTCAAAATTCTTCGCCAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCATACACTGCTGTGCCTAGCAAGGGCTTCAGTCAAGCTGAATCAATTACCAATTCCTCTATGTCTTCTGGATCCATGGATAACTCAAGCAATAGAAATTCTGCGTCCGAGGCAGTTCGAGTTAGTTTATCCAGTGCTGTAAGTTCATCCAGCCAGGGTTCCTATCAAGAAGATTTTGATGCTTTAGGTGATGTTTTTATTTGGGGAGAAGGTATCTATGATGGAATTCTTGGTGGTGGTCTGCACAGAGTTGGAAACGTGTCTTTTTCAGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCAAAAGTGGTTCTAGATGTTCAGAGTATAGCTTGTGGCTATAAACATGCTGTTCTAGTTACCAAACAGGGAGAAACATTTAGCTGGGGGGAGGAGTCTGGAGGAAGGCTTGGACACGGTGCCGAAGTGGATGTTCTTAACCCCAAGCTCATTGACACTCTTAGTGGCATGAACATTGAGTTAGTAGCATGTGGAGAATATCATACATGCGCTGTTACTTATTCTGGGGATCTTTATACCTGGGGTGATGGTACTCACAATTCTGGGTTACTTGGGCATGGAAATGAAGTTAGTCACTGGATTCCTAAGAAAGTAGGTGGTGCATTGGAAGGATTACGTGTATCATATGTGTCCTGTGGTCCCTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTTACATTTGGTGATGGAACTTTTGCCGCCTTAGGCCATGGAGATCATAGCAGTTCAAATATTCCTCGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTTTCATGTGGTGTTTGGCACACTGCTGCCGTTGTTGAGGTGATAGATGAATCTGTGGAATCTTCTACACAGTCATCTAGTGGAAGACTGTTCACTTGGGGTGATGGCGATAAAGGCCAACTTGGAATTCTTGATAAGAAACCTAGACTAGTTCCCGTATGTGTAATTGCATTGTCTAACGAAAACATTTGTCGTGTAGCTTGTGGCCACAGTCTTACAGTTGCATTGACGACGTCGGGACATGTGTATACAATGGGCAGTACATCTTTCGGACAACTTGGTTGTCCTGCAGCAAATGGGATGGTTCCTGCACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATCGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTTCACATGGGGGAAGGGTTTAAATGGGCAATTAGGTCATGGTGACAACGGTCACAGGAATAAGCCCACACTTGTCCAATTTTTAAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTTTGCCTTCATAAATGGATACCGAGTGTTGATCATTCTGCATGTTCAGGCTGTCGTAATCCATTTAATTTTAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAATTCATGCACCAGCAAAAAATCTATGAAGGCTTCCCTTGCTCCAAATTCCAACAAGACATATCGTGTTTGTGATGATTGTTATTTTAAACTTAAGAAAACCGCTGAATCAGTATCCTTGCAAACTCCTAGCTGGAAAAGTGTCAGTTCGCAAGACAGTAAGGCCCCTAAAACACAGGGAACACTATTAAAACTTTCTTCATTTGGTTCTATTGTTCAATCAGAAAGCAGTCACTCAAAGCTTCCAGATTCTCTTGATAGCCATGTTTTTACAGCTTTGAATGGAAAATTACAGCTGGGGGGTTTTGTTCTTTCCAAATTATCAAACTCTCTTTCCGTGGAAGCTAGGAAATACCTGTCTGTTTCTGAGCTTGCTACAAGAATATCTTGTCAGCCAACTTCTCCAGTTTCATCGAAGTCAAGCCCACGACAATCTTGTGAAGATATCGTACATGAAGATTTAAGACACAGAAATGGTGTTCTAAGTCACGAAGTTATAAGTTTAAAAACACAAGTTGAAGAACTTACTCGGAAGTCAAAAAGTCTTGAGGCCGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGGCTGAAGTAGCTGCGGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACAGCTCAGTTGAAGGAAATGATGCAAAGACTGCCAGAAGGTCATGATGCTGACTTAAGCACCGATTCCTATGTTGAAACCACTAATAGGATTGTAGATCAATCCATAGATGAGAGTCATATGACAAACATGATCACTCCCAAAAACGAAAGCAGAGGCAATGCAGAAAAGGTGGTATTGCCTAATGGCGTCACAACACAAAGTGGAAAGGCAGAATGGGTGGTGCAAGATGAACCAGGTGTATACGTAAGTTTGTCTTCCCTTCCAGGTGGTGGTAATGAACTTAAGCGCGTTCGCTTCAGTCGAAGGCATTTCACAGAAGAAGAAGCTGAAAAGTGGTGGGCTGAAAATGGTCCCAAAGTATTGGAGCGGCACAATGTAGTTGCCTTGTAG 3057 0.4207 MADRQKTGLGDSRDIEQAITSLKKGSYLLKYGRRGKPKFCPFKLSNDESLLIWYSGKEEKQIRLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFAGLKALITRGNYRKWGYESRPESLYSDSPKSGTRRSIPSFAPFDPRDIDRVSFQNSSPNRWVKAFSEIISYTAVPSKGFSQAESITNSSMSSGSMDNSSNRNSASEAVRVSLSSAVSSSSQGSYQEDFDALGDVFIWGEGIYDGILGGGLHRVGNVSFSEMDAFLPKALESKVVLDVQSIACGYKHAVLVTKQGETFSWGEESGGRLGHGAEVDVLNPKLIDTLSGMNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGLLGHGNEVSHWIPKKVGGALEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFAALGHGDHSSSNIPREVETLKGLRTTRVSCGVWHTAAVVEVIDESVESSTQSSSGRLFTWGDGDKGQLGILDKKPRLVPVCVIALSNENICRVACGHSLTVALTTSGHVYTMGSTSFGQLGCPAANGMVPARVEDKIADSFIEDIACGSYHVAVLTSKAEVFTWGKGLNGQLGHGDNGHRNKPTLVQFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSACSGCRNPFNFRRKRHNCYNCGLVFCNSCTSKKSMKASLAPNSNKTYRVCDDCYFKLKKTAESVSLQTPSWKSVSSQDSKAPKTQGTLLKLSSFGSIVQSESSHSKLPDSLDSHVFTALNGKLQLGGFVLSKLSNSLSVEARKYLSVSELATRISCQPTSPVSSKSSPRQSCEDIVHEDLRHRNGVLSHEVISLKTQVEELTRKSKSLEAELERTSKQLKEVAEVAADEAGKCKSAKEVIKSLTAQLKEMMQRLPEGHDADLSTDSYVETTNRIVDQSIDESHMTNMITPKNESRGNAEKVVLPNGVTTQSGKAEWVVQDEPGVYVSLSSLPGGGNELKRVRFSRRHFTEEEAEKWWAENGPKVLERHNVVAL* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3220 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 713 IPR013083 -
Psa4g3220 1018 Coils Coil 878 898 - -
Psa4g3220 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 586 633 IPR000408 -
Psa4g3220 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 532 581 IPR000408 -
Psa4g3220 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 360 411 IPR000408 -
Psa4g3220 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 309 357 IPR000408 -
Psa4g3220 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 416 464 IPR000408 -
Psa4g3220 1018 Pfam Regulator of chromosome condensation (RCC1) repeat 480 529 IPR000408 -
Psa4g3220 1018 Pfam Transcription factor BRX N-terminal domain 873 900 IPR027988 -
Psa4g3220 1018 Gene3D - 372 469 IPR009091 -
Psa4g3220 1018 Gene3D - 187 371 IPR009091 -
Psa4g3220 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 533 584 IPR000408 -
Psa4g3220 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 309 360 IPR000408 -
Psa4g3220 1018 Coils Coil 836 874 - -
Psa4g3220 1018 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 295 305 IPR000408 -
Psa4g3220 1018 SUPERFAMILY RCC1/BLIP-II 246 638 IPR009091 -
Psa4g3220 1018 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 454 464 IPR000408 -
Psa4g3220 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 481 532 IPR000408 -
Psa4g3220 1018 CDD PH_PLC_plant-like 13 123 - -
Psa4g3220 1018 Pfam Transcription factor regulating root and shoot growth via Pin3 958 1013 IPR013591 -
Psa4g3220 1018 Gene3D - 13 129 IPR011993 -
Psa4g3220 1018 SUPERFAMILY PH domain-like 14 122 - -
Psa4g3220 1018 Pfam FYVE zinc finger 637 703 IPR000306 GO:0046872
Psa4g3220 1018 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1012 - -
Psa4g3220 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Psa4g3220 1018 SUPERFAMILY FYVE/PHD zinc finger 637 716 IPR011011 -
Psa4g3220 1018 Gene3D - 470 644 IPR009091 -
Psa4g3220 1018 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 1012 - -
Psa4g3220 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 415 IPR000408 -
Psa4g3220 1018 SMART fyve_4 633 704 IPR000306 GO:0046872
Psa4g3220 1018 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 641 703 IPR017455 -
Psa4g3220 1018 ProSiteProfiles BRX domain profile. 959 1014 IPR013591 -
Psa4g3220 1018 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Psa4g3220 1018 PRINTS Chromosome condensation regulator RCC1 signature 361 377 IPR000408 -
Psa4g3220 1018 PRINTS Chromosome condensation regulator RCC1 signature 402 418 IPR000408 -
Psa4g3220 1018 PRINTS Chromosome condensation regulator RCC1 signature 418 432 IPR000408 -
Psa4g3220 1018 PRINTS Chromosome condensation regulator RCC1 signature 522 540 IPR000408 -
Psa4g3220 1018 PRINTS Chromosome condensation regulator RCC1 signature 580 601 IPR000408 -
Psa4g3220 1018 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Psa4g3220 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 585 636 IPR000408 -
Psa4g3220 1018 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 247 308 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3220 Psa-Chr4 268885053 268901447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3220 952 1015 Major Intrinsic Protein MIP AT1G31880 50.000 1.92e-15 77.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3220 4 268885053 268901447 Psa4g3220 4 268885053 268901447 ECH