Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3210 ATGTCTAGCAGAAGATCTAGTTCGAGACAATCTGGTGTTTCCACTGAGATCTCTGATGCTCAAATTAATGATCTCATCACCAAGTTGCAACAACTTATCCCTGAACTTGCAAGGCGTTCCAACAAGGTTTCAGCTGCTAAAGTTTTGCAAGAGACTTGCAATTACATCAAAAACTTGCATAGAGAGGTTCATGATTTAAGTGACCGATTATCACAACTTTTGGACACTATAGACCCTAACACTCCTCAAGCAGCTATCATTAGGAGCTTAATTATGTGA 279 0.3943 MSSRRSSSRQSGVSTEISDAQINDLITKLQQLIPELARRSNKVSAAKVLQETCNYIKNLHREVHDLSDRLSQLLDTIDPNTPQAAIIRSLIM* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3210 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
Psa4g3210 92 Pfam Helix-loop-helix DNA-binding domain 21 59 IPR011598 GO:0046983
Psa4g3210 92 CDD bHLH_AtPRE_like 17 76 - -
Psa4g3210 92 Coils Coil 56 76 - -
Psa4g3210 92 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
Psa4g3210 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 84 IPR036638 GO:0046983
Psa4g3210 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Psa4g3210 92 Gene3D - 20 86 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3210 Psa-Chr4 268014056 268016944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3210 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 63.830 3.02e-34 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g3210 HLH 9.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3210 - - gmx:100791371 135.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3210 4 268014056 268016944 Psa4g3210 4 268014056 268016944 ECH
Psa4g3210 4 268014056 268016944 Psa3g4481 3 419331490 419334211 ECH