Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3209 ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAAGATACTAGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACATCGAAGTCTTGGGGTGCATATTTCAAAGGTTCGCTCTGCTACTCTGGACACTTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAAATACCTCCAAATTATGACAGAGTTGGTATTGAAAACTTCATTCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTGCTAGAAGAGAAAAGTCATTCACAATGGCAAAAACCTGTTGAAAGAGTTGGGCATAATTATGTTGCAGAGAATACTTTTGAGGAAAGGAGGAAAATCCAACCATCAAATGCAAATCCTGCTACTAGAATTAGTATTCTTGCTCCTCCTAAAGGACATGTTCAGGTAGCTCCAGTGGCTAAACATCAGCATATTGATAAAGTGGAACCTCCGGTGCCACAAGTGCAACCTGAAACGTCACAGATGACTGACACAGTTCATAACCCCCCTCCAAAAGTTGATTTTGCAATGGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCTGACGTAGCTGATGCTACTGCTGATGATGATAACAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACGTCAACAACTGAGAAAACGGACACGAGGAAATCGGTTGAGAGTACACCCCAGCCCGCCTCTGGAATTGAGGATCTATTTAAAGACTCATCTTCAGTAACGCCAAACTCTGCTCTTGAAACACCACAAAAAGATATAAAAAATGATATTATGAGCCTCTTTGAAACTAACAATATAGTGTCTCCATTTGCTAAGCATCAACAGCAGTTGGCTATGCTGGCACAACAACAGTCTCTTATAATGGCGGCTGCAGCTGCTGCTAAATCTGCTACTGGGGATGCCAAATATCCTGCTAATGTACAGCAACCTGGTCTCAATATACCTATTCAAAGTTGGCCAGCTGCAAGCTACCCAGTTCCAGGAGTAATTCCCATGGGTGGTCAGGGAGAATTGCAGAAACTTATGCAGACAATGAACATGACTTCCGCGCATTCAGCAGAGAGCTCAGTTCAGTATCCACCTTCTAGTTTTTTTCCGATGGCACAGGTTACTCCAGTTAATGGCGCGGCGACGGCAGTAGCGAGTAAACCTCAGTCAGCAACTCCAGTATCATCAACCACTACACAGACGGCAAATGATTATGATTTTTCATCATTAACACAAGGAATGTTTGCGAAACCCTGA 1428 0.4314 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAEIPPNYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLLEEKSHSQWQKPVERVGHNYVAENTFEERRKIQPSNANPATRISILAPPKGHVQVAPVAKHQHIDKVEPPVPQVQPETSQMTDTVHNPPPKVDFAMDLFDMLSMDDPNEKGSDVADATADDDNNWAGFQSAAETSTTEKTDTRKSVESTPQPASGIEDLFKDSSSVTPNSALETPQKDIKNDIMSLFETNNIVSPFAKHQQQLAMLAQQQSLIMAAAAAAKSATGDAKYPANVQQPGLNIPIQSWPAASYPVPGVIPMGGQGELQKLMQTMNMTSAHSAESSVQYPPSSFFPMAQVTPVNGAATAVASKPQSATPVSSTTTQTANDYDFSSLTQGMFAKP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3209 475 PANTHER ARF GTPASE ACTIVATOR 1 474 - -
Psa4g3209 475 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Psa4g3209 475 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 474 IPR044520 GO:0005096
Psa4g3209 475 CDD ArfGap 19 117 - -
Psa4g3209 475 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Psa4g3209 475 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Psa4g3209 475 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Psa4g3209 475 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Psa4g3209 475 MobiDBLite consensus disorder prediction 281 311 - -
Psa4g3209 475 MobiDBLite consensus disorder prediction 264 311 - -
Psa4g3209 475 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Psa4g3209 475 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Psa4g3209 475 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3209 Psa-Chr4 267910818 267925266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3209 16 163 C2H2 Transcription Factor Family AT4G05330 40.252 1.23e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3209 K12486 - gmx:100807561 690.263