Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3201 ATGGAATCTACATGCTTTGGTTCTAATGTGAAAGTCTCACTAAAGCAAAAATGTAAATCTACTACAGAAGAAGAAGAAGAAGAGAGAACAATATCTAGTGGTGAAAATGGTTGCTTTGATTGTAATATTTGCTTGGAATCAGCAAATGATCTTGTGGTTACACTTTGTGGTCATCTCTATTGCTGGCCATGTATATATAAATGGCTTAATGTCCAAAACTCTTCCGTTGAACCAGATAAGCAGCCTACATGCCCTGTTTGTAAAGCTGTCATCTCGCATACTTCATTAGTCCCTCTTTACGGTCGTGGAAAATCAGATTCAGAAACCGGGTCGAATAAACTTCAGGTGGGTTTGGTTATACCTCATCGACCACCTCCGTACAACTTGAATGCTATGTTAACGTCTAATCGGCCATCAAATTTGCATCACGGGGAGCAGCAGCAGCTCCATCCGAATTATTTCCATACACAATCACGGCCGATCCATTATCATCAGCATTACATCCCTCACCTTTATGAAGGTTATGGTGGCAATGGATTACCTTATCATGGTGGTGCTGCTAGTTTTGTGAATACTGTGATTGGTATGTTTGGGGATATGGTGTTGACAAGGGTTTTTGGTGTGTCTGATGCGAATTTGGTTACTTACTCTCACAATGGAAGTACCAGTCCTAGAATGAGGAGGCAGGAGATGCAGATTGACAAGTCTCTAAACAGAGTTTCAATCTTTCTTCTTTGCTGTTTCATTTTGTGTCTTCTCTTGTTTTGA 768 0.4049 MESTCFGSNVKVSLKQKCKSTTEEEEEERTISSGENGCFDCNICLESANDLVVTLCGHLYCWPCIYKWLNVQNSSVEPDKQPTCPVCKAVISHTSLVPLYGRGKSDSETGSNKLQVGLVIPHRPPPYNLNAMLTSNRPSNLHHGEQQQLHPNYFHTQSRPIHYHQHYIPHLYEGYGGNGLPYHGGAASFVNTVIGMFGDMVLTRVFGVSDANLVTYSHNGSTSPRMRRQEMQIDKSLNRVSIFLLCCFILCLLLF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3201 255 Pfam Zinc finger, C3HC4 type (RING finger) 41 87 IPR018957 GO:0046872
Psa4g3201 255 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Psa4g3201 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 155 IPR013083 -
Psa4g3201 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 255 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa4g3201 255 SUPERFAMILY RING/U-box 38 100 - -
Psa4g3201 255 SMART ring_2 41 87 IPR001841 -
Psa4g3201 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 7 255 - -
Psa4g3201 255 ProSiteProfiles Zinc finger RING-type profile. 41 88 IPR001841 -
Psa4g3201 255 CDD RING-HC_AtRMA_like 39 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3201 Psa-Chr4 267555692 267557537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3201 15 241 C3H Transcription Factor Family AT4G27470 45.022 2.54e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3201 K10666 - gmx:100817526 303.138