Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3170 ATGAACCAGAAACATCTTTTAAGGTTTATAAAATCTAAGCTGAGGAAAGAATCCGATGAGGTCGTAATATTTCGAGATGGGACTTATCTGACCTTGAAAGAAATTGTTGAGAGTTTGGATTTGACTGGATACAACCTCAATGTTGATCTTTTGGATGTTCGCATAGACAAGAGTACATTTCATCGCTTTGACAAATTCAATCTCAGGTGCAATCCCTGTGGTCAAAGTAGGCTCAGGGAGATATTCCTGAAGCAGGATAATCTTATTCAAGGTCGTTTCCTGGCCGAGGTGACAAAGCAAGTATTTTCTGATCTTAAAGCCAGTAAATATCATATGGCTGAGTATAGAATACCAATATATGGTAGGAAACAAAGTGAGTGGGATCAACTTGCTAGTTGGATAGTGAATAATGAACTCTACAGCCAGAATATGGACATTGAAGCAAGTCAAAACCAGGTTAATGCTAACCTGATACCAACAGAATGGGCAAAAATTGGTGATGCTAATGTCGATAAGTCTGAAGAGTTACTCTGTGCACTGGATAATCTCCCCGTGAACCTTCGTGCACTACAAACCTATAATGTTAGAAAATCTGTTAATAATTCACGTAGCCACGAAAATTCTAAAATTCAGAGGAAATCCAGGACATTGGTAGACACATGGAAGAAGCGTGTTAAAGCTGAAATGAATACGATTGATACAAAAATTGGTTCAACCCGTGTTGTTTCTTGGCCTACCAAGCCAACACCATCAGATGTTTCTCACTCTGGAAATAGAAAAAATCCGGAGGATCCTCTGAGAATGTTGTGA 810 0.3889 MNQKHLLRFIKSKLRKESDEVVIFRDGTYLTLKEIVESLDLTGYNLNVDLLDVRIDKSTFHRFDKFNLRCNPCGQSRLREIFLKQDNLIQGRFLAEVTKQVFSDLKASKYHMAEYRIPIYGRKQSEWDQLASWIVNNELYSQNMDIEASQNQVNANLIPTEWAKIGDANVDKSEELLCALDNLPVNLRALQTYNVRKSVNNSRSHENSKIQRKSRTLVDTWKKRVKAEMNTIDTKIGSTRVVSWPTKPTPSDVSHSGNRKNPEDPLRML* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3170 269 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 153 226 IPR035441 -
Psa4g3170 269 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 166 231 IPR035441 -
Psa4g3170 269 MobiDBLite consensus disorder prediction 242 256 - -
Psa4g3170 269 Gene3D - 1 87 - -
Psa4g3170 269 Pfam AMP deaminase 1 144 IPR006329 GO:0003876|GO:0032264
Psa4g3170 269 Pfam TFIIS helical bundle-like domain 176 225 IPR017923 -
Psa4g3170 269 Gene3D - 88 152 - -
Psa4g3170 269 ProSiteProfiles TFIIS N-terminal domain profile. 157 228 IPR017923 -
Psa4g3170 269 PANTHER AMP DEAMINASE 1 144 - -
Psa4g3170 269 SUPERFAMILY Metallo-dependent hydrolases 1 144 IPR032466 -
Psa4g3170 269 PANTHER AMP DEAMINASE 1 144 IPR006329 GO:0003876|GO:0032264
Psa4g3170 269 SMART TFS2_5 153 227 IPR003617 GO:0005634
Psa4g3170 269 MobiDBLite consensus disorder prediction 242 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3170 Psa-Chr4 262717185 262718240 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Psa4g3170 A_deaminase 2.1e-10 CL0034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3170 K01490 - cit:102615426 265.774