Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3165 ATGAAGTTTGGTTGGAATCTAACAAGCCGCTTTAATAGGCGCCTAACAGCATGGAACAATTGGGACGACCCTTCTTCAGGTCAAATTACTTATGGCTTCATAAAAAGTGACTTGCCTGAATCGAAAATCCAAAATGGTTCATCAGTGATATACAGAAGTGGACCTTTTAATGGCCTTCGTTTTGGTGCTACACAAAAACTGAAACATGTTCCATTATTCATCGTTGATTTTGTGTACAAAACTGATGAGTATTATTTTCATTATCAACCCAAAGATCCTTCACTACTCTCAAGAATTGTTATCAACCAAACTGTTTCGGCGCTGCAGCGCTTTATTTGGGTTGAAGAGAATCAAAAATGGATATTGTATTTGAATGTTCCGAGAGATGAATGTGATAATTACAACCGATGTAGTTCCTTTGGGATTTGTGCGATGATTGGTAAGTCCTCAATGTGTGAGTGCTTAAGCGGGTTCACTCCCAAATCACCTCAAAATTGGAGTGTAAAGGACTGGAGTCAAGGATGCATGCGTAATGAAAATTGGAGATGCAGAGAGAAAAATAAAGATGGGTTCATCAAATTTCAAAATGTAAAGGTCCCGGACACTAAGAAATCTTGGATAAGTAAAAGTATGACACTTGAGACATGTAAGGTCAAATGTTGGGAGAATTGTTCTTGTACAGCTTATGCCAACTCCAACATTACAGGAAATGGAAGTGGTTGCATCATTTGGTTCAGTGATCTTTTGGACATGAGACAATTGCCTGATTCTGGACAAGATTTATATGTTAGATCCTCTGCCATAGAAACAACAAACCGAGATGATTCAAGAAAAAGGATGGTTGTTGTCACAAGTACCACTTGCTCAATTATTGTGATACTTTTTCTATTCATCATCGTTTTTTGTTGGAGGAGAAAAGCTAAATCTAAATTTAGAGAAACAAAATTAAAGGAAAGCAAAAGTGAACAAGAAGACCTGGAACTACCTTTCTTTGACTTTGGTGCAATAAAATTTGCCACTAATGACTTCTCAAATAACAACAAACTAGGAGAAGGTGGTTTTGGTCCAGTATATAAGGGCATGCTATCAGATGGACACGAAATTGCAGTTAAAAGGCTTTCACATAGCTCTGCACAAGGAATAGAAGAATTTAAGAATGAGGTTTTATTTTGTTCCAAACTTCAACATCGAAACCTAGTTAAGGTCCTTGGTTTTTGCATTGAAGAACAAGAGAAATTACTCATCTATGAATATATGCTCAATAAAAGCTTAGACTTATTTCTTTTTGATTCCTCTCGAAGTAAATTTTTAGATTGGTCTCAACGGTTTGCCATTATATGTGGTATTTCTAGAGGACTTATTTACCTTCACCAGGACTCTAGATTACGAGTCATACATAGAGATTTAAAAGCAAGTAATATTTTATTAGATGCTGATATGAGTCCCAAAATAGCTGATTTTGGCCTTGCTCGAATGTGTGGAGATGATCAGATTCAAGGAAACACAAGTAGAGTTGTTGGTACATATGGTTATATGGCGCCCGAATATGCAATTGATGGAATATTCTCCATCAAATCTGATGTATATAGCTTTGGAATTTTATTGCTAGAGATTATAAGTGGAAAGAAAAATAAAGGACTTTCCCATTCAAATCGCAACTACAATCTTATTTCTCAG 1677 0.3614 MKFGWNLTSRFNRRLTAWNNWDDPSSGQITYGFIKSDLPESKIQNGSSVIYRSGPFNGLRFGATQKLKHVPLFIVDFVYKTDEYYFHYQPKDPSLLSRIVINQTVSALQRFIWVEENQKWILYLNVPRDECDNYNRCSSFGICAMIGKSSMCECLSGFTPKSPQNWSVKDWSQGCMRNENWRCREKNKDGFIKFQNVKVPDTKKSWISKSMTLETCKVKCWENCSCTAYANSNITGNGSGCIIWFSDLLDMRQLPDSGQDLYVRSSAIETTNRDDSRKRMVVVTSTTCSIIVILFLFIIVFCWRRKAKSKFRETKLKESKSEQEDLELPFFDFGAIKFATNDFSNNNKLGEGGFGPVYKGMLSDGHEIAVKRLSHSSAQGIEEFKNEVLFCSKLQHRNLVKVLGFCIEEQEKLLIYEYMLNKSLDLFLFDSSRSKFLDWSQRFAIICGISRGLIYLHQDSRLRVIHRDLKASNILLDADMSPKIADFGLARMCGDDQIQGNTSRVVGTYGYMAPEYAIDGIFSIKSDVYSFGILLLEIISGKKNKGLSHSNRNYNLISQ 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3165 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Psa4g3165 559 SMART serkin_6 343 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3165 559 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 558 - -
Psa4g3165 559 SUPERFAMILY Protein kinase-like (PK-like) 328 543 IPR011009 -
Psa4g3165 559 Pfam Protein tyrosine and serine/threonine kinase 346 544 IPR001245 GO:0004672|GO:0006468
Psa4g3165 559 ProSiteProfiles PAN/Apple domain profile. 183 266 IPR003609 -
Psa4g3165 559 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 558 - -
Psa4g3165 559 CDD PAN_AP_plant 184 264 - -
Psa4g3165 559 SMART ntp_6 186 265 IPR003609 -
Psa4g3165 559 Pfam S-locus glycoprotein domain 51 162 IPR000858 GO:0048544
Psa4g3165 559 ProSiteProfiles Protein kinase domain profile. 343 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3165 559 ProSiteProfiles EGF-like domain profile. 127 164 IPR000742 -
Psa4g3165 559 Gene3D Phosphorylase Kinase; domain 1 303 418 - -
Psa4g3165 559 Pfam PAN-like domain 183 251 IPR003609 -
Psa4g3165 559 Gene3D Transferase(Phosphotransferase) domain 1 419 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3165 Psa-Chr4 261631440 261644494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3165 281 547 Receptor kinase-like Gene Family AT4G23190 59.925 4.32e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa4g3165 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3165 - - gmx:100792537 709.138