Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g3147 | ATGGATCCCACCAAAAAGCGTAAGCTTGACGAGAACGGATTCGGCGGTGAAGCTGATCACCTAAAGCTCTCCCCGTCGGAAGCCCGTAAGGTAATCGAGCGTTTCACCTCCGACCAGCTAATTAACATCCTCCAAGACGCCGTCATCCGCCATCCTGATGTTCTCTCCGCCGCCCGCGCAATTGCTGACACCGACATCTCCCAACGCAAGCTATTCATCCGCGGCCTCGGCTGGGACACAACCACCGACGGTCTCCGCTCTCTCTTTTCAACTTATGGTGAACTTGAAGAAGCCATTGTCATTGTCGACAAGGCCACCGGTAAGTCTAAGGGTTATGGCTTTGTCACCTTCCGCCATGTGGATGGGGCTCTACTAGCTCTTCGTGAGCCTAGCAAGCGCATTGATGGACGGGTTACTGTCACGCAATTAGCTGCAGCAGGGAATTCGGGTTCTAACACCAACACAGCAGATATTGCGCAGCGAAAGATATATGTATCTAACGTGCCACCGGATCTCGCAGGAGATAAGCTTTTAGCCCATTTCTCACTGTATGGCGAGATCGAGGAAGGTCCATTGGGCTTTGATAAACAGACAGGAAGGTCGAAAGGGTTCGCTCTTTTTGTGTACAAGACACCTGAAGGGGCTCAGGCTGCGCTGTTGGAGCCCGTGAAGAATGTAGAGGGGCGGCAGTTAAATTGCAAGCTGGCAATAACAGATGGGAAGCAGCAACGTGGTGGGCCAGATGGGGTTCAGCCCCGTGGGAATACCCATGGAAATGGAATGGGGATGGCTCCTGCAGCTGGGCCTGGGCCGGGTCAATACGGTGGCTCTGTTGGTATGGGTCCTTATGGAGGGTTTTCTGGTGGGCATCAGGGTCAGCCTCCAATGGGTAACCATCCTATGAATTCGTCTGTTGGCGGTGGGTTGTCTTCTGTGGGGAGTCAGGCCCCGTCTTCAGTGGGTGGTGCGGGTGGGTATGGTGGTGGTCATTATGGAGGTTATGGTGGGCCTACAGCGACAGGTTTTGGTGGCAGCGGTGGCGGCAGCGGTTATGGAGGAGGTAGTGGTGGGACCGGTGCAGGTGCCGGTGGTGGACATAGTTCTGCTGGAGGTAATGTTGGGCTTTCTTCTTTGTACAGATTACCAAGTTCAGGTGGAATGCAAGCTGGAGGATATCCTGATAGCGGCCACTATAGTTCATCGGGTTATCAGAATCAGCATCTTCCTCCTGCTGGGGCGTCGCCGGTACCAAGGGTTCAACCTGGTTCCATGTATCCAAATGGGCCCCCTTACTACTAA | 1299 | 0.5412 | MDPTKKRKLDENGFGGEADHLKLSPSEARKVIERFTSDQLINILQDAVIRHPDVLSAARAIADTDISQRKLFIRGLGWDTTTDGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNTADIAQRKIYVSNVPPDLAGDKLLAHFSLYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGKQQRGGPDGVQPRGNTHGNGMGMAPAAGPGPGQYGGSVGMGPYGGFSGGHQGQPPMGNHPMNSSVGGGLSSVGSQAPSSVGGAGGYGGGHYGGYGGPTATGFGGSGGGSGYGGGSGGTGAGAGGGHSSAGGNVGLSSLYRLPSSGGMQAGGYPDSGHYSSSGYQNQHLPPAGASPVPRVQPGSMYPNGPPYY* | 433 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g3147 | 432 | CDD | RRM_RBM24_RBM38_like | 69 | 144 | - | - | |
| Psa4g3147 | 432 | Gene3D | - | 153 | 292 | IPR012677 | - | |
| Psa4g3147 | 432 | Gene3D | - | 56 | 152 | IPR012677 | - | |
| Psa4g3147 | 432 | PANTHER | GEO13361P1-RELATED | 1 | 402 | - | - | |
| Psa4g3147 | 432 | SMART | rrm1_1 | 70 | 142 | IPR000504 | GO:0003723 | |
| Psa4g3147 | 432 | SMART | rrm1_1 | 162 | 234 | IPR000504 | GO:0003723 | |
| Psa4g3147 | 432 | MobiDBLite | consensus disorder prediction | 394 | 408 | - | - | |
| Psa4g3147 | 432 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 161 | 242 | IPR000504 | GO:0003723 | |
| Psa4g3147 | 432 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 170 | IPR000504 | GO:0003723 | |
| Psa4g3147 | 432 | MobiDBLite | consensus disorder prediction | 390 | 432 | - | - | |
| Psa4g3147 | 432 | PANTHER | UBP1-ASSOCIATED PROTEIN 2C | 1 | 402 | - | - | |
| Psa4g3147 | 432 | SUPERFAMILY | RNA-binding domain, RBD | 152 | 261 | IPR035979 | GO:0003676 | |
| Psa4g3147 | 432 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 163 | 229 | IPR000504 | GO:0003723 | |
| Psa4g3147 | 432 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 138 | IPR000504 | GO:0003723 | |
| Psa4g3147 | 432 | SUPERFAMILY | RNA-binding domain, RBD | 61 | 145 | IPR035979 | GO:0003676 | |
| Psa4g3147 | 432 | CDD | RRM_RBM24_RBM38_like | 161 | 236 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g3147 | Psa-Chr4 | 260222643 | 260229169 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g3147 | 157 | 236 | C2H2 Transcription Factor Family | AT2G19380 | 43.750 | 2.87e-12 | 66.6 |