Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3145 ATGACTTGTTGCTCTCATCTTTTCAGAAAAATAAGGTCTTCCTCAGCCACACGATTCGCCGGAACCGATATAGATATTTCAGAACTTCACAATGTCAAAATTTACACTTACAAGGAACTGCGAATCGCCACTACAGGGTTTAGTCTTGCAAACAAGATAGGGCAGGGAGGTTTTGGATCTGTCTATAAGGGAAAGTTGAGAGATGGTTGTCTGGTAGCTATAAAGGTTTTATCAGCCGAATCAAAACAAGGGGTCCAGGAGTTTTTGACAGAAATCAAGGTGATTTCTAGTATAGAGCATGAAAATCTAGTGAAGTTGTATGGATGCTGTGTGGAAAACAATCATAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCACAAACACTTCTTGGTCATAGTAACATCAAATTCAGTTGGGATGTAAGGCACAACATTTGCGTAGGTGTTGCTCGAGGGCTTGCATTCCTTCACGGAGAGGTTCAGCCACATATCATTCATAGAGATATAAAAGCCAGCAATGTATTACTTGACACAGATCTCAGACCCAAAATTTCCGATTTTGGCCTTGCAAAGCTCATTTCTCCAAACTTGACACATATTAGTACAAGGGTTGCTGGAACTGCTGGTTATGTGGCACCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCGGACATCTATAGTTTTGGAGTGTTACTGTTAGAAATTGTTAGTGGGAGACCCAACACAAATAGACGTTTACCTGTTAAAGAACAATATCTTCTTACCAGGGCATGGGATTTGTATGAGAAAGGGGAGCTAAAAACATTGGTTGATTCTTTTCTAGAAGAGGACTTCAGTGTTGAGGAGGCAGTCAAATTTTGCAAGATTGGTCTTCTTTGCACACAGGATTCTCCTCAGCTCCGGCCTTCTATGTCCACTGTGCTTAAAATGCTTATTGGTGAAAAAGATGTGAATGAGGATCATATAATAAAACCAGGCTTAATATTTGAATTTGTAGATGCCAATGACCTAGAGGATAAAAGATGCAAGGGTGAAGTTAAAAGTACATGTACTTCTTTGTTGGCTAATTCAAGGAAGCAAGATGATTCATCTTCATCAAAAACCTCTTTTGCTACCATGTGTTTCACTGCTATTTGTGATCGAACCAATTAA 1167 0.3942 MTCCSHLFRKIRSSSATRFAGTDIDISELHNVKIYTYKELRIATTGFSLANKIGQGGFGSVYKGKLRDGCLVAIKVLSAESKQGVQEFLTEIKVISSIEHENLVKLYGCCVENNHRILVYGYLENNSLAQTLLGHSNIKFSWDVRHNICVGVARGLAFLHGEVQPHIIHRDIKASNVLLDTDLRPKISDFGLAKLISPNLTHISTRVAGTAGYVAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVKEQYLLTRAWDLYEKGELKTLVDSFLEEDFSVEEAVKFCKIGLLCTQDSPQLRPSMSTVLKMLIGEKDVNEDHIIKPGLIFEFVDANDLEDKRCKGEVKSTCTSLLANSRKQDDSSSSKTSFATMCFTAICDRTN* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3145 388 PANTHER RECEPTOR-LIKE KINASE 1 376 - -
Psa4g3145 388 Pfam Protein kinase domain 49 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3145 388 Gene3D Phosphorylase Kinase; domain 1 20 122 - -
Psa4g3145 388 SMART serkin_6 47 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3145 388 CDD STKc_IRAK 53 316 - -
Psa4g3145 388 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 376 - -
Psa4g3145 388 SUPERFAMILY Protein kinase-like (PK-like) 25 316 IPR011009 -
Psa4g3145 388 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Psa4g3145 388 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Psa4g3145 388 ProSiteProfiles Protein kinase domain profile. 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3145 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3145 Psa-Chr4 259940119 259942305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3145 35 333 Receptor kinase-like Gene Family AT1G56120 55.184 5.51e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa4g3145 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3145 - - gmx:100801735 601.282