Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3144 ATGGGACCTCTTATGATTTATTCATGTAACTTTGTTTGGTATCTTTTATTGGTTTTATGTGTAGTACCTAGAATCCACGTTGTCCAAGCAAACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCCAATCAAAGTCCAACCAGTCTTGGAGGAGCTTGTGGTTATGATGATACCTTTCATGCTGGATTTGGAGTGAACACTGCAGCAGTAAGCACAATGCTTTTCAGAGACGGTGAAGTTTGTGGTGCTTGCTACCACGTCATATGTGACTACAAAATAGATCCAAAATGGTGTCTTAGAAGTCGAAGTGTCACAATAACTGTGACTAATTTTTGTCCTCCAAACAATCACGGTGGATGGTGTGATCCTCCTAACCATCACTTTGATATGTCCATGCCTTCTTTCTTTGGCATTGCACGACAAGGTAGTGAAGGCATCGTTCCTGTTCTTTATAGAAGGGTGGCATGCAAAAGAAGAGGTGGAGTTAGGTTTACATTGAAGGGACAATCTAACTTCAACATGGTGATGATAACAAACGTGGGTGGGAGTGGTGATGTGAAGGGAGTGTGGATGAAAGGATGGAGAAGTGGAGGTTGGTTGGCAATGCATAGAAATTGGGGTGCAAATTGGCAGAGCAGCGGAGATGTAAGGAACCAGAGACTCTCGTTTAAGATTAGTTTGGTTGATGGTAAAACATTGGTGTTTCTCAATGTGGTTCCTTCTAATTGGAGATTTGGACAGACATTTTCATCCCACACTCAATTCTTTTAG 774 0.4238 MGPLMIYSCNFVWYLLLVLCVVPRIHVVQANGWLNAHATFYGANQSPTSLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYHVICDYKIDPKWCLRSRSVTITVTNFCPPNNHGGWCDPPNHHFDMSMPSFFGIARQGSEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMITNVGGSGDVKGVWMKGWRSGGWLAMHRNWGANWQSSGDVRNQRLSFKISLVDGKTLVFLNVVPSNWRFGQTFSSHTQFF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3144 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Psa4g3144 257 PANTHER EXPANSIN-A15 8 256 IPR002963 GO:0009664
Psa4g3144 257 SMART dpbb_1 68 152 IPR007112 -
Psa4g3144 257 PANTHER EXPANSIN-A12 8 256 - -
Psa4g3144 257 Gene3D - 162 257 IPR036749 -
Psa4g3144 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Psa4g3144 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Psa4g3144 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Psa4g3144 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Psa4g3144 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Psa4g3144 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Psa4g3144 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Psa4g3144 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Psa4g3144 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Psa4g3144 257 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Psa4g3144 257 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Psa4g3144 257 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Psa4g3144 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Psa4g3144 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Psa4g3144 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Psa4g3144 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Psa4g3144 257 Pfam Lytic transglycolase 68 152 IPR009009 -
Psa4g3144 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Psa4g3144 257 SUPERFAMILY Barwin-like endoglucanases 32 180 IPR036908 -
Psa4g3144 257 Gene3D - 20 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3144 Psa-Chr4 259524412 259526189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3144 14 257 Expansin Gene Family AT3G15370 58.182 1.27e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3144 - - gmx:106795376 463.381