Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3124 ATGGAAGAGAGAAATGGTTGTGAGAAACTTGATGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTAGTTGGATTTTACCTCAAGAGAAAGATTCAACAACGCCCTCTTGCTATTGAGCTCATCAAACAGCTTGATATTTATAAATTTGATCCTTGGGATCTTCCAAAGTTGGCAAGTACAGGAGAGAAAGAGTGGTATTTTTACTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGGTGGGTTTTGGAAAGCTACTGGAACAGACAGACCTATATATTCCTCAGAGGGTTCAAAGTGTATTGGTTTGAAGAAGTCATTAGTTTTCTACAAAGGTAGAGCTGCTAAAGGAGCCAAAACTGATTGGATGATGCATGAGTTTAGATTACCTTCTTTCAATGACTCCTCAGCTTCATCTCCAAAGAAATATGTTGATAAAACTATTCCTGCTAGTGAATCTTGGGCAATATGCAGGATATTCAAGAAAACAAATGCAACAGCTCAAAGAGCACTCTCTCACTCATGGGTCCCTCCATTCCTTGAAACATCAACCTCCAATGTTCTAACAAATGATGGAAACCACAACCATTTTTCTTCACCAAACATGATGTTAACAAAGAAACCTACCTTTACAAGCCAATTTTGCACTACTAATAACTCCAACAATACAACACAAAACTTAACCTCTTCTGGTGGCACAACACTTTGTCCTTTAGATGTTCCATCTTATCATAATAATAACAATAATCCAATTATTGATCCATTGATTTACAAACCGTTATACCGTTTACCGATTTCGAACGATCAAGACCTTAACCTTAGCACCGGCTTAGTATTCTCTTCTCCTCTTGAAACATCTTGTAACAAAACTTCAATGGATGTTTCTTCCTTGCTATTGGGTATGTCATGTGAAGGAACAACCTCAAACTATGTTGACCATTACAATAATGGATATCCATTGATGGCTAATAGTATTCCTAATGTGAATGTGCAAGAGTTGGAGAGAGTGAGATCTATTGGATTCCCATTTAGTGTGCCTTTAAATATTGGTGAAGCTTGGAAGTCAAGTCTTGTTTGGGATGCTGCATCTTGTTCTTCTGATGAACCCTCTAGCTATTCTACTACCAAGTGTTACACTTAG 1176 0.3801 MEERNGCEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRGGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGAKTDWMMHEFRLPSFNDSSASSPKKYVDKTIPASESWAICRIFKKTNATAQRALSHSWVPPFLETSTSNVLTNDGNHNHFSSPNMMLTKKPTFTSQFCTTNNSNNTTQNLTSSGGTTLCPLDVPSYHNNNNNPIIDPLIYKPLYRLPISNDQDLNLSTGLVFSSPLETSCNKTSMDVSSLLLGMSCEGTTSNYVDHYNNGYPLMANSIPNVNVQELERVRSIGFPFSVPLNIGEAWKSSLVWDAASCSSDEPSSYSTTKCYT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3124 391 PANTHER PROTEIN FEZ ISOFORM X1 1 389 - -
Psa4g3124 391 Gene3D NAC domain 23 179 IPR036093 GO:0003677|GO:0006355
Psa4g3124 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 389 - -
Psa4g3124 391 SUPERFAMILY NAC domain 13 174 IPR036093 GO:0003677|GO:0006355
Psa4g3124 391 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Psa4g3124 391 ProSiteProfiles NAC domain profile. 14 174 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3124 Psa-Chr4 256084443 256087085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3124 1 263 NAC Transcription Factor Family AT1G26870 61.029 1.78e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g3124 NAM 4.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3124 - - vun:114179488 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3124 4 256084443 256087085 Psa4g3124 4 256084443 256087085 ECH