Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3118 ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAGCGATGAAGACGACGACGTTTTCTACTACCGCTACTGCGCTTCGTCCTCAACCCCCAACACCACCACCGGCACCACATCCAGTAATCAACCCCAATCAAAACCGAACAACAAAGGATCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGCTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACATGCACCTAAGCCGCGGTGTCGCGTTTGTCCAATTCGTTTCTCGTAATGACGCCCAACGCGCCGTGGCGGAGATGAATAAGATGATTCTCAATGGAAGGACACTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTTTGGAGTTTATTCGGAAGCGCGTGTACAATACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGACCTCAGCCTATGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGGGTG 652 0.5077 MSSKKKHKRKHSDSDEDDDVFYYRYCASSSTPNTTTGTTSSNQPQSKPNNKGSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHMHLSRGVAFVQFVSRNDAQRAVAEMNKMILNGRTLTASIAADNGRALEFIRKRVYNTETALCYECGGHGHLSYECPKNQLGPRPRPQPMKPRRGFSGLRDRDGEEEGDEEEEEG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3118 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Psa4g3118 217 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
Psa4g3118 217 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 215 IPR044598 GO:0000398|GO:0005689
Psa4g3118 217 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Psa4g3118 217 SMART rrm2_1 68 141 IPR003954 GO:0003676
Psa4g3118 217 SUPERFAMILY Retrovirus zinc finger-like domains 155 181 IPR036875 GO:0003676|GO:0008270
Psa4g3118 217 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 215 - -
Psa4g3118 217 MobiDBLite consensus disorder prediction 30 56 - -
Psa4g3118 217 MobiDBLite consensus disorder prediction 30 61 - -
Psa4g3118 217 Gene3D - 1 149 IPR012677 -
Psa4g3118 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Psa4g3118 217 MobiDBLite consensus disorder prediction 180 217 - -
Psa4g3118 217 CDD RRM_ZCRB1 66 143 IPR034219 -
Psa4g3118 217 SMART rrm1_1 68 141 IPR000504 GO:0003723
Psa4g3118 217 Gene3D - 155 191 - -
Psa4g3118 217 SUPERFAMILY RNA-binding domain, RBD 63 148 IPR035979 GO:0003676
Psa4g3118 217 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3118 Psa-Chr4 255284537 255285188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3118 66 129 Eukaryotic Initiation Factors Gene Family AT3G11400 43.750 2.03e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3118 K13154 - gmx:100814914 239.58