Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3101 ATGGATCCGGGTTCGATGATGAACGAGGGTTCATTTCCGAATGGGAGTGGGAATACGACGCCGTTTAGTTTAGCGGAGATCTGGCAGTTTCCAGCTGCAATTAATGGCGGCGGAGGTGGATTGGGACTTAGAAGGCCGCAATTTGGAACCGGTTTGGGACAGTTTGGTGAATTTGGAACCGGTTCGAACCGGGACGTGGATGGACCGGACCCGAGAGTTGTTTTGAACCATGGTGTTGTTGGTGGTAAGAAGAGGCGTGACTCGGAAGATGTTGATTCACCTAAGTGTGTTTCCACCAGTAATGGCGGTGCCAATGCCGTGAATGATATTGATGGAAAACGGTCTAAAGCATTAGGGAACAGAATTGATGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGCAGTAAGCCGCCTCCTCCCGACCCTCCGAAGCAAGATTACATCCACGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAACGCGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTAGTTCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAAATAATTAATTATATTCAATCACTTCAGCGCCAAGTGGAGTTTTTGTCAATGAAACTTGAAGCAGTTAATTCGAGACTCAACACTGGCATTGAAGTCTTTCCTCCAAAAGATTATGGTCAACAAACATATGATCTAGCCGGCATGCCATTTGTTTCACAAGCTACAAGAGAGCCAAGCAGAGGATCATCCCCAGAATGGTTACATATGCAGGTAGGTGGCGGTTTCGAAAGAACATCGTAG 852 0.4636 MDPGSMMNEGSFPNGSGNTTPFSLAEIWQFPAAINGGGGGLGLRRPQFGTGLGQFGEFGTGSNRDVDGPDPRVVLNHGVVGGKKRRDSEDVDSPKCVSTSNGGANAVNDIDGKRSKALGNRIDDGKVEGEASSGKPAEQSSKPPPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEVFPPKDYGQQTYDLAGMPFVSQATREPSRGSSPEWLHMQVGGGFERTS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3101 283 MobiDBLite consensus disorder prediction 114 131 - -
Psa4g3101 283 CDD bHLH_AtBPE_like 153 237 - -
Psa4g3101 283 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 283 IPR024097 GO:0006355
Psa4g3101 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 230 IPR036638 GO:0046983
Psa4g3101 283 PANTHER BNAC05G07950D PROTEIN 1 283 - -
Psa4g3101 283 MobiDBLite consensus disorder prediction 259 283 - -
Psa4g3101 283 Coils Coil 209 229 - -
Psa4g3101 283 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Psa4g3101 283 SMART finulus 168 218 IPR011598 GO:0046983
Psa4g3101 283 Gene3D - 159 235 IPR036638 GO:0046983
Psa4g3101 283 MobiDBLite consensus disorder prediction 54 148 - -
Psa4g3101 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3101 Psa-Chr4 254068136 254071666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3101 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 57.258 3.86e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g3101 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3101 - - gmx:100784478 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2617 2 301845324 301848760 Psa4g3101 4 254068136 254071666 PCT