Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3077 ATGTGGGAGTCATTAACCGATAGCAAAATTGATGATAAGTTATCCATTGAATACATACAACATAAACTTCATGAAAATTTAGCTGGTGAAAGACTGTCAAAGAGACTGGAAACAAGCAACCTCTACTTTTTGAATTGTTTGACTCTAGATGAATCTTGGAGTCTGTTAAAGAAAATGGCATTTAGGAATGAAATCAATGGAGTGGATCAAAAACTCGAATCAATTGGCAAACAAATAGCAGAAAAGCGAAGCCAGAGAAAGCTTCGTACTACCAATCCTGAAAATGAGTTACCAAAGTTTGTCGCCTCGGGTTATCTTCAATGCTCAGATGAAAAGCAACTCGTGGAAGACACTGGTGAAGAATTTGTGAAGTTTTTCTTGATGAGGTCATTTTACCAAGATGCAAAAGTGGGTGAAGATGGTGATATAGTTAGTTTCGAAATGCATGATTTAATGCATGATCTTGAAATGCAAGTAGCTGGCAATGTTTGTTGTTACTTAGACAAACCCATCATCGCCGTTGAACCCGTGTCCGAACCAGCAACCGCCGAACCTCCGGACTTGGAGGAAGTTGATGAACCAAAGGCCGAAGCTGAGAAGATGAAGAAAGTCAAGGAAACCGAACCTAAGAAAGATTCCAAACCACGAAACCTTGCTTCGCATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGTTGAAGGAGAAGAACGGTTTGAGCCAATACGCGATTGTGAAATTCATTAAAGAGAAACAGAAACAGCTTCCTGGAAACTTCAAGAAGCTATTGCTCCAAAATTTGAAGAAGAATGTTGCTTCTGGAAAGCTTGCTAAGGTTAAAGGTTCGTTCAAGCTTTCTGCAGCAGCTAAGAAGCCAACAGTTGCCAAGCCAAAGTCAAAACCAGGCCCTGAACCTACCAGGGCGGAGTTGGTCCCTGCCTATGTCCGATTGCTTCGAGATAATGAGGTTGAGGTACGCATAGCAGCTGCTGGGAAAGTGACCAAGTTTTGTCGGATTTTAAGTCCTGATCTTGCAATTCAGCATATTCTTCCTTGTATCAAGGAATTTTCATCGGATTCTTCACAACATGTCCGCTCAGCTCTGGCTTCAGTAATAATGGGAATGGCTCCAGTGTTAGGAAAGGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTATCCCTTCTGAAGGATGAATTTCCTGATGTTCGCCTAAACATCATCAGCAAGCTTGATCAAGTGAATCAGGTGATTGGAATCAATCTGTTATCTCAATCATTAATACCCGCCATTGTTGAGCTTGCAGAGGATAGACATTGGAGGGTTCGGCTTGCAATTATAGAGTATATACCCTTGTTGGCAAGTCAATTGGGGGTTGGATTTTTTGACGATAAATTGGGTGCTCTTTGCATGCAATGGTTACAGGATAAGTTGCTACATAAAAATAGCTTGAAAGCAGCTGGAGAGTTGTCTCATGAAGAACCAAACAAGGACTTACAACGTTGGGCTGCTTCGCATCTATTTTCTGCTTGTTTGGTAGAGGAGGCCTTTGAGCTATCGACTGCATATCGCTTTCTCAACCCTTTGCCATTTGATGCTCCCTGCTCACGGATCACTAGATTTTTAAGATTCCTGCAGTTTGCTCTCACACTGATTGGACTTTTTCTCCCTGGTCACATAGAGAATGGGAAAAATATAGAGCCGGTGATGTTCTCGGCTGCAACTTATGATAAAGCATCTGAGGCCTGGACTGGATTATCGCCTAGTGCACTGGAGTTTAAAAGATTAGCGGCATATGCCCAAAGCAGTGCAATTTCGTTGAGAAAACTCACATTTCAGAAAGAGATTGGTCCAAATAGATGGGAGTGCTATTTACGAACTCTTTTTGAACAATCATGA 1905 0.4173 MWESLTDSKIDDKLSIEYIQHKLHENLAGERLSKRLETSNLYFLNCLTLDESWSLLKKMAFRNEINGVDQKLESIGKQIAEKRSQRKLRTTNPENELPKFVASGYLQCSDEKQLVEDTGEEFVKFFLMRSFYQDAKVGEDGDIVSFEMHDLMHDLEMQVAGNVCCYLDKPIIAVEPVSEPATAEPPDLEEVDEPKAEAEKMKKVKETEPKKDSKPRNLASHPTYEEMIKDAIVSLKEKNGLSQYAIVKFIKEKQKQLPGNFKKLLLQNLKKNVASGKLAKVKGSFKLSAAAKKPTVAKPKSKPGPEPTRAELVPAYVRLLRDNEVEVRIAAAGKVTKFCRILSPDLAIQHILPCIKEFSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGINLLSQSLIPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKLLHKNSLKAAGELSHEEPNKDLQRWAASHLFSACLVEEAFELSTAYRFLNPLPFDAPCSRITRFLRFLQFALTLIGLFLPGHIENGKNIEPVMFSAATYDKASEAWTGLSPSALEFKRLAAYAQSSAISLRKLTFQKEIGPNRWECYLRTLFEQS* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3077 634 MobiDBLite consensus disorder prediction 193 219 - -
Psa4g3077 634 SMART h15plus2 218 284 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g3077 634 ProSiteProfiles HEAT repeat profile. 429 467 IPR021133 -
Psa4g3077 634 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 220 289 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g3077 634 Gene3D - 292 516 IPR011989 -
Psa4g3077 634 Pfam linker histone H1 and H5 family 221 288 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g3077 634 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT A 304 484 - -
Psa4g3077 634 SUPERFAMILY "Winged helix" DNA-binding domain 219 297 IPR036390 -
Psa4g3077 634 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 304 484 - -
Psa4g3077 634 Pfam HEAT repeats 392 478 - -
Psa4g3077 634 ProSiteProfiles HEAT repeat profile. 312 350 IPR021133 -
Psa4g3077 634 Pfam Nrap protein PAP/OAS1-like domain 5 502 549 IPR035370 -
Psa4g3077 634 SUPERFAMILY ARM repeat 303 506 IPR016024 -
Psa4g3077 634 MobiDBLite consensus disorder prediction 178 221 - -
Psa4g3077 634 Gene3D - 217 291 IPR036388 -
Psa4g3077 634 CDD H15 219 300 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g3077 634 ProSiteProfiles HEAT repeat profile. 351 389 IPR021133 -
Psa4g3077 634 ProSiteProfiles HEAT repeat profile. 390 428 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3077 Psa-Chr4 252197851 252202545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3077 215 341 Single Myb Histone (SMH) Gene Family AT1G17520 28.472 1.87e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3077 K03456 - pop:7483945 333.954