Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3076 ATGACCACCGAAGAACCCATCATCTCCGTTGAACCCGTGTCCGAACCAGGAACCGCCGAACCTCCGGACTTGGAGGAAGTTGATGAACCAAAGGCCGAAACTGAGAAGATGAAGAAAGTCAAGGAAACCGAACCTAAGAAAGATTCCAAACCACGAAACCTTGCTTCCCATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGTTAAAGGAGAAGAACGGTTCGAGCCAATACGCGATTGTGAAATTCATTAAAGAGAAACAGAAACAGCTTCCTGGAAACTTCAAGAAGCTATTTCTCCAAAATTTGAAGAAGAATGTTGCTTTTGGAAAGCTTGCTAAGGTTAAAGGTTCGTTCAAGCTTTCTGCAGCAGCTAAGAAGCCAGCAGTTGCCAAGCCAAAGTCAAAACCAG 418 0.4426 MTTEEPIISVEPVSEPGTAEPPDLEEVDEPKAETEKMKKVKETEPKKDSKPRNLASHPTYEEMIKDAIVSLKEKNGSSQYAIVKFIKEKQKQLPGNFKKLFLQNLKKNVAFGKLAKVKGSFKLSAAAKKPAVAKPKSKP 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3076 139 SUPERFAMILY "Winged helix" DNA-binding domain 55 133 IPR036390 -
Psa4g3076 139 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 139 - -
Psa4g3076 139 CDD H15 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g3076 139 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa4g3076 139 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa4g3076 139 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g3076 139 MobiDBLite consensus disorder prediction 29 55 - -
Psa4g3076 139 Gene3D - 52 138 IPR036388 -
Psa4g3076 139 MobiDBLite consensus disorder prediction 1 59 - -
Psa4g3076 139 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g3076 139 PANTHER HISTONE H1 3 139 - -
Psa4g3076 139 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3076 Psa-Chr4 252177767 252178184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3076 58 136 Single Myb Histone (SMH) Gene Family AT1G17520 36.585 8.92e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3076 K11275 - gmx:100775944 141.354