Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3074 ATGACTCCTACATTGAATGCCAATATATTAGAGAGTAATGACTATTGGAAAGAACAACGACCTGAGTTTGATTCATATTGGCAGGAAAGGGCTAAAGTTGCAAAACAAGATAATCATGCAGCTTATTTTCCTGATCCTTATGCTGTCTCCGGCAATTTTACTGCTTCTATTTCCGAAATCATAGCTGGAAGAGCACAAGAAGAACTTGGGTGGAGGAAAAGGAGGCGAATAAACACCCGCGGAGGTAAAGGCGGTCCAATCTATGTTGTCACCGATCCTTCCGACAACGAATTGTTGAACCCAAAAGTCGGCACTCTCCGTCATGCAGTCACACGTAACGGTCCCCTTTGGATCACATTCGCTCGCAGCATGTTGATCACACTCCAACAAGAGCTTATTATGACAAGCAATAAGACAATTGATGGTAGAGGAGTTGATGTTTACATTGCCAATGGAGCTGGATTCACCATTCAGTTTATTAAGAATGTTATCATCCATGGAATCAAGATTTACAACATTCAAGTCCGTGAAGGCAAGGACCAAATCAATGCTAAAGAGGTCACAAAGAGAGAATACACAGAGGAAAAAGTATGGACAAGCTGGCAGTGGAGATCCATCAACGATGAGTTTTTGAACGGAGCATTCTTTGTAAACTCCGGACCAGAACTAAAGAACAGACCATTTTCAAGGAAAGACATGATCACAGCTAAACCAGGAAGTTATGTTGGAAGACTTACAAGGTATTCTGGAATTCTAGGATGCCGTGTTGGTCTTTTGTAA 780 0.4179 MTPTLNANILESNDYWKEQRPEFDSYWQERAKVAKQDNHAAYFPDPYAVSGNFTASISEIIAGRAQEELGWRKRRRINTRGGKGGPIYVVTDPSDNELLNPKVGTLRHAVTRNGPLWITFARSMLITLQQELIMTSNKTIDGRGVDVYIANGAGFTIQFIKNVIIHGIKIYNIQVREGKDQINAKEVTKREYTEEKVWTSWQWRSINDEFLNGAFFVNSGPELKNRPFSRKDMITAKPGSYVGRLTRYSGILGCRVGLL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3074 259 PANTHER PECTATE LYASE 1 65 - -
Psa4g3074 259 PANTHER PECTATE LYASE 78 178 - -
Psa4g3074 259 PANTHER PECTATE LYASE 182 257 - -
Psa4g3074 259 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Psa4g3074 259 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Psa4g3074 259 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Psa4g3074 259 PANTHER PECTATE LYASE 18-RELATED 1 65 IPR045032 GO:0030570
Psa4g3074 259 PANTHER PECTATE LYASE 18-RELATED 182 257 IPR045032 GO:0030570
Psa4g3074 259 PANTHER PECTATE LYASE 18-RELATED 78 178 IPR045032 GO:0030570
Psa4g3074 259 SUPERFAMILY Pectin lyase-like 78 175 IPR011050 -
Psa4g3074 259 Pfam Pectate lyase, N terminus 22 62 IPR007524 GO:0030570
Psa4g3074 259 SUPERFAMILY Pectin lyase-like 181 251 IPR011050 -
Psa4g3074 259 Gene3D - 180 253 IPR012334 -
Psa4g3074 259 Gene3D - 69 179 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3074 Psa-Chr4 251994355 251995796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3074 183 257 Polysaccharide Lyase AT2G02720 47.500 1.45e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3074 K01728 - gmx:100798579 240.736