Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3062 ATGGGACGCAAGAAAATAGAAATCAAGAAAGTCGAAAAAGAAACCAACAAACAAGTCACATTCTCGAAAAGAAGATCTGGATTATTCAAAAAAGCTTGCGAACTTTGTGTCTTAAGCGATGTTAATCTAGCCATCATTGTGTTTTCTCCAGCTGACAAACTATTCTGCTGCGGTCGTCCAAACACCGACGCGATCCTCAACAGTTACATCAAAGGAACCACCGAGTTTGAGGATCAGAAGTCGATGGAAGATTCTTGGATCTGTGAGGAGTATAATAGAGAATATGAAGAGGCACTAAAGATGTTGGAAATGGAAAAGAAGAAACTTGCGGATATTGAGAATATGGCTAGGTTTCCCAATAGAGGTGGATGGTGGAATGCTTCTATAGATGATATGAGTAGTGAAGAGCTGGAACAGTTTATGATGTCGGTTTTTGAGTTAAGGAAGAAGCTTGCTGAAAAAGAACATGAATATCTCATGATGTTTTCTATGTAA 495 0.3879 MGRKKIEIKKVEKETNKQVTFSKRRSGLFKKACELCVLSDVNLAIIVFSPADKLFCCGRPNTDAILNSYIKGTTEFEDQKSMEDSWICEEYNREYEEALKMLEMEKKKLADIENMARFPNRGGWWNASIDDMSSEELEQFMMSVFELRKKLAEKEHEYLMMFSM* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3062 164 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g3062 164 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Psa4g3062 164 Coils Coil 88 115 - -
Psa4g3062 164 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g3062 164 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g3062 164 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g3062 164 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 2 161 - -
Psa4g3062 164 PANTHER MADS BOX PROTEIN 2 161 - -
Psa4g3062 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Psa4g3062 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g3062 164 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3062 Psa-Chr4 250536208 250536702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3062 2 149 Type I MADS-box Gene Family AT5G60440 37.419 1.18e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa4g3062 SRF-TF 3.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3062 - - cam:101502875 200.29