Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g3056 | ATGAGTGATCATTTGGTGTTGTTTGTGGATCGACTGGTTCGGCCCATGCCGGTTGAGCCTTTGGCTCAGCACCCGGCGCAGCCCGCTCCTGAGCCGGTGACTCCGGTGAATGAAGCACCGGCGGGGCCTTCTGGTTCTTCGGTGGAGGAGGATGATGACGGTGAGGAGGAGCCGCTGTTGCAGATGGGGGAGTGCAGGATTTGTCAGGAGGAGGATAGTATCAATAATCTGGAGAATCCTTGCGGCTGTAGCGGGAGTCTAAAGTATGCTCATAGAAAGTGTGTCCAACACTGGTGCAATGAAAAAGGAGACACAACCTGTGAAATATGTTCTAAGTCCTATGAACCTGGCTATACTGCTCCACCACCTCGTCCACATGCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACACTTTCTGGCACACCTTTGGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTCTTTGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAATGGAGCTGCATTTTGTCGCTCAGCCGCTCTAATTTTAATGGCACTTCTACTCTTGAGGCACGCACTTTCTGTCACAGATGCTGATGCTGATGATGATCCATCTACTTTTTTCTCTCTTTTCTTGCTTCGAGCAGCTGGCTTTCTTCTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTACAACGGCGGCGACAAAGACAAGAGGCTGCAGCACTAGCGGCAACTCAAGTTGCGTTTGTGCTACAATCCGGGCAGCATAGGGGTCTGCAATTTGCCATAGCACCGGCACCAACTGTGAATCCACACCAGGAACAAGTGTAG | 852 | 0.5023 | MSDHLVLFVDRLVRPMPVEPLAQHPAQPAPEPVTPVNEAPAGPSGSSVEEDDDGEEEPLLQMGECRICQEEDSINNLENPCGCSGSLKYAHRKCVQHWCNEKGDTTCEICSKSYEPGYTAPPPRPHAEETTIDIGGGWTLSGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPAPTVNPHQEQV* | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g3056 | 283 | MobiDBLite | consensus disorder prediction | 23 | 57 | - | - | |
| Psa4g3056 | 283 | Pfam | RING-variant domain | 65 | 110 | IPR011016 | GO:0008270 | |
| Psa4g3056 | 283 | SUPERFAMILY | RING/U-box | 64 | 114 | - | - | |
| Psa4g3056 | 283 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
| Psa4g3056 | 283 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 119 | IPR013083 | - | |
| Psa4g3056 | 283 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 271 | IPR033275 | - | |
| Psa4g3056 | 283 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 1 | 271 | - | - | |
| Psa4g3056 | 283 | CDD | RING_CH-C4HC3_MARCH | 65 | 110 | - | - | |
| Psa4g3056 | 283 | Pfam | Protein of unknown function (DUF3675) | 116 | 234 | IPR022143 | - | |
| Psa4g3056 | 283 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 57 | 117 | IPR011016 | GO:0008270 | |
| Psa4g3056 | 283 | SMART | ringv_2 | 64 | 111 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g3056 | Psa-Chr4 | 250107188 | 250111071 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g3056 | 64 | 110 | C3H Transcription Factor Family | AT2G37950 | 44.000 | 1.10e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g3056 | - | - | ahf:112734090 | 453.366 |