Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3046 ATGTTTCATGTTTCATGTTTCATGTGTATGTGTGGATTTTCAGTTGGAGCTTTACCACCTAGGGTTTATGTTGGTCATTCCATTTACAAGGGGAAGGCTGCTCTCACTATCACTCCTCGACCGCCGGAGTTCATGCCTTTGGATTCAGGGGCATATAAGATATCTAAGGATGGTTATGTGCTGCTTCAGTTTGCCCCATCGGTTGGTCCGCGCCAGTATGATTGGAATAGAAAACAGGTTTTCTCGTTATCGGTGGATGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACCGTTGTGAATTTTTTCATGATCCTTACAAGGGAAAAAGCGATGAAGGCAAAGTCAAAAAAGTTTTGAAAGTTGAGCCTTTTCCGGATGGTTCTGGATTCTTCTTTAATCTCGGTGTTCAAAACAACCTTGCGAACTTGGAAGAAAGCATCACTCTCCCCGTAACAAAATCAGAGTTATCAGTTTTGAGCGCAATTTTCAAGTTCATCATGCCGTACCTACTTGGTTGGCATACCTTTGCAGACTCGATAAATCCGGAATATTCTGTGGCGGCGGCGAGTGTGGCACGCAATGCCAACCCCAAATATGGAGGAGACTATGAATGGAGCAGATAG 627 0.4434 MFHVSCFMCMCGFSVGALPPRVYVGHSIYKGKAALTITPRPPEFMPLDSGAYKISKDGYVLLQFAPSVGPRQYDWNRKQVFSLSVDEMGSVISLGARDRCEFFHDPYKGKSDEGKVKKVLKVEPFPDGSGFFFNLGVQNNLANLEESITLPVTKSELSVLSAIFKFIMPYLLGWHTFADSINPEYSVAAASVARNANPKYGGDYEWSR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3046 208 Pfam Whirly transcription factor 28 162 IPR013742 GO:0003697|GO:0006355|GO:0006952
Psa4g3046 208 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 15 208 - -
Psa4g3046 208 SUPERFAMILY ssDNA-binding transcriptional regulator domain 20 208 IPR009044 GO:0003677|GO:0006355
Psa4g3046 208 Gene3D Transcriptional Coactivator Pc4; Chain A 16 190 IPR009044 GO:0003677|GO:0006355
Psa4g3046 208 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 15 208 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3046 Psa-Chr4 248502223 248504377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3046 17 208 Whirly Transcription Factor Family AT1G14410 67.708 6.39e-99 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Psa4g3046 Whirly 7.4e-57 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3046 - - gmx:100789252 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3046 4 248502223 248504377 Psa4g3046 4 248502223 248504377 ECH