Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3033 ATGGGGAGATCATTAGACATTCTTCTTTTTATAGTTTGTTTGGCAATAATCACTCCTACCTTGAATGCCAATAAATTAGAGAGTAGTGAGTATTGGAAAGAACAGCGGCCCGAGTTTGATTCATATTGGCAGGAAAAGGCTGAAATTGCAAAACAAGATAATCATGCAGCTTATTTTCCTGATCCTTATGCAGTCTCCGGCAATTTTACTGCTTCTATTTCCGAAATCATAACTTTAAAGAGCTCAAGAAGGAACTTGAAGGGAGGAAAAGGCGAAAAATGTTTGGCCACAAACCCTGTTGATAGATGCTGGAGGTGTGACCCAAATTGGGCTAAGAACCGTCAGAAGCTAGCAGACTGTGTCCAAGGATTTGGCAGAAACACCCGCGGAGGTAAAGGCGGTCCAATCTATGTTGTCACTGATCCTTCCGATAACGAATTGTTGGATCCAAAACCCGGCACTCTCCGTCATGCAGTCACACGTAACGGTCCCCTTTGGATCATATTCGCTCGCAGCATGTTGATCACACTCCAACAAGAGCTTATCATGACAAGCAACAAGACAATTGATGGTAGAGGAGTTGATGTTTACATTGCCAATGGAGCTGGATTCACCATTCAATTTGTTAAGAATATTATCATCCACGGAATCAAGATTTACAACATTCAAGTTCGTCAAGGCAAGGACCAAATCAATGCTAAACAGATAACAAAGAGGGAATACGCAGACGCAAAACATTGGTCAAGCTGGCAATGGAGATCCATCAACGACGAGTTTTTGAATGGAGCATTCTTTGTAAACTCCGGACCGGAGCTAAAGAATAGACCATTTTCAAGGAAAGACATGATCAAAGCTAAACCAGGAAGTTATGTTGGAAGGCTTACAAGGTATTCTGGAATCCTAGTATGTCGTGTCGGTCAACCTTGTTAG 930 0.4215 MGRSLDILLFIVCLAIITPTLNANKLESSEYWKEQRPEFDSYWQEKAEIAKQDNHAAYFPDPYAVSGNFTASISEIITLKSSRRNLKGGKGEKCLATNPVDRCWRCDPNWAKNRQKLADCVQGFGRNTRGGKGGPIYVVTDPSDNELLDPKPGTLRHAVTRNGPLWIIFARSMLITLQQELIMTSNKTIDGRGVDVYIANGAGFTIQFVKNIIIHGIKIYNIQVRQGKDQINAKQITKREYADAKHWSSWQWRSINDEFLNGAFFVNSGPELKNRPFSRKDMIKAKPGSYVGRLTRYSGILVCRVGQPC* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3033 309 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Psa4g3033 309 PANTHER PECTATE LYASE 18-RELATED 4 227 IPR045032 GO:0030570
Psa4g3033 309 PANTHER PECTATE LYASE 18-RELATED 231 309 IPR045032 GO:0030570
Psa4g3033 309 Gene3D - 97 235 IPR012334 -
Psa4g3033 309 PANTHER PECTATE LYASE 4 227 - -
Psa4g3033 309 PANTHER PECTATE LYASE 231 309 - -
Psa4g3033 309 SUPERFAMILY Pectin lyase-like 98 224 IPR011050 -
Psa4g3033 309 SUPERFAMILY Pectin lyase-like 228 300 IPR011050 -
Psa4g3033 309 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Psa4g3033 309 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Psa4g3033 309 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3033 Psa-Chr4 246909705 246911225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3033 233 309 Polysaccharide Lyase AT1G14420 46.341 7.33e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3033 K01728 - gmx:100798579 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3033 4 246909705 246911225 Psa4g3033 4 246909705 246911225 ECH
Psa4g3033 4 246909705 246911225 Psa1g1727 1 122902730 122906408 ECH