Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3030 ATGACTTTTTTGAAGAAGGTCAGAATGGACCAAAACAATTTAAATGGAAGTCTACCAGATAATTTTTTCAATCAGCTTCCTCAACTTGAAACATTTACAGTATACTTCAACAGTTTAGAAGGAAACATTCCACGATCAATTGGCAATTGCACATCGCTGAAATTCTTAGCTTTCGCAATGAATTTTTTCACAGGTCCAATACCTGAGGAGATTGGCCATCTTGATCAATTTGAGTTTTTAGAATTGGCAAACAATAGCTTAAGTGGAACTATCCCACCCAAACTTTTCAACATGTCATCACTCACACACTTGCATCTTGAACTAAATCATTTCTCAGGCCTAATTCCATCAAACAAGGGATACAGCCTTCCTAGCCTGCAAGAACTACACTTGAATATTAACAATTTTGTTGGAAATATTCCTGCCAGTATATTTAACGCTTCTAACCTCGTTCAATTTCAGTTGAGTTACAATAAATTCAGTGGAAGTTTTCCCGATATTGCTTTTGGAAATTTAAGGTCCCTCCAAGCTTTTCTCATACATAACAATGGCTTAACAATAGGTGATCCTTCTCAATTCTTTAATTCCCTGAAAAGTTGTAGAAATTTGTTATATTTAGATCTATCAGGGAATCATATTCAATCCAATCTTCCTAGGTCAATTGGAAACATATCTTCACAATACTTTCAGGCAGATTCTTGTGGAATTTATGGTAATATTCCACTAGAAGTCGGAAACATGAGCAACTTGCTATATTTTTCTGTAGAAAAGAATAATATAAGTGGACCAATACCTGGAACATTCAAAGGGTTACTGAAACTTCAAGTATTGAATCTTGGCAACAATGGAATACAAGGTTCATTTAATGAGGAGCTTTGTGAAATGAAGAGTTTGAGTGAGTTGTATCTAGATATTAATAGCCTTTCTGGTTCTTTACCAACATGTTTGGGAAATATGACTTTTCTTAAAAAGTTAGACATTGGTTTTAACAATTTGAACTCTAAGATTCCTTCTTCTCTTTGGAGTCTCACAGATATCTTAGAGATAAATTTGACCTCTAATGCTTTCATTGGTAATCTTCCACCTGAGATTGGGAATTTGAGAGCAATTTTACTGTTAGATCTATCAAGAAATCAAATTTCAAGCAACATTCCTTCAACCATCAGTGTCATAAAAACTTTGCAGAGTCTTTCCTTAGCACATAACAAACTATATGGGTCAATTCCCACATCACTGGGTGACATGTTAAGCTTGATCTCCTTGGACTTGTCCCAAAACTTGTTAACTGGTGCTATTCCAAACAGTTTAACATCACTATTGTATCTTCAAAATATCAACTTTTCATACAATGGATTACAAGGAGAGATTCCTGATGGTGGACCTTTCAAGAATTTCACAGCTCAGTCATTTATGCATAATGAAGCACTCTGCGGAAATCCTCGCCTACAAGTACCTCCATGTCGTAGACAAGTTAAGAAAAGATCATTGGCCAAGAAGTTATTACTTAAATGCATGGTTCCCATAGTTGTGTCAATCACTTTGATTGTTGCATGCATAATACTTTTGAAAGTTAATAAAAGAAAGAAGGTTGAAAATACTCTTGAGAAAGGTTTATCAACTTTAGGAGCTCAAAGAAGAATTTCTTATTATGAACTTGTGCAAGCAACAAATGGATTCAATGAGGGTAATTTACTTGGAAGGGGTGGCTTTGGCTCTGTGTATCAGGGCAAGCTTCCTGATGGTGAGATGATTGCAGTTAAAGTAATTGATTTACAGTCCGAGGAAAAATCAAGAACCTTTGATGCAGAATGCAATTCAATGAGAAATCTGCGACATCGAAATCTGGTTAAGATAATAAGCAGTTGTTCAAATCTTGATTTCAAGTCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTGGACAAATGGTTGTATTCAGATAATTATTATTTGACTTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCATGGTTCTCCAATACCAGTGGTTCATTGTGATCTAAAGCCTACAAATGTGTTGCTGGATGAAGATATGGTTGCACATGTTAGTGATTTTGGTATTGCGAAGCTCATGGATGAAGGACAATCTAAAACTCATACACAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCAAAGGGGATTATATCTGTAAAGGGAGATGTGTACAGCTATGGAATTATGCTAATGGAAGTCTTTACAAGAAGAAAACCAACAGATGACATGTTTGTTGGAGATCTAAGTTTGAAAACATGGATCAGTGGATCATTACCTAATTCTATTATGGAGGTCTTGGATTCTAATTTAATCCAACATAATAGAGAACAAATTGATAAAAATTTGACACACATCTCGTCTATTTTTCGTTTATCCTTGAATTGTTGTGAATATTCACCTGAAGAAAGAATTAATATGGTAGATGTTAAGGCGTCCTTGATCAGAATCAAGACTTTGATTTTTGGTAGAAAGACAGTCTAA 2535 0.3511 MTFLKKVRMDQNNLNGSLPDNFFNQLPQLETFTVYFNSLEGNIPRSIGNCTSLKFLAFAMNFFTGPIPEEIGHLDQFEFLELANNSLSGTIPPKLFNMSSLTHLHLELNHFSGLIPSNKGYSLPSLQELHLNINNFVGNIPASIFNASNLVQFQLSYNKFSGSFPDIAFGNLRSLQAFLIHNNGLTIGDPSQFFNSLKSCRNLLYLDLSGNHIQSNLPRSIGNISSQYFQADSCGIYGNIPLEVGNMSNLLYFSVEKNNISGPIPGTFKGLLKLQVLNLGNNGIQGSFNEELCEMKSLSELYLDINSLSGSLPTCLGNMTFLKKLDIGFNNLNSKIPSSLWSLTDILEINLTSNAFIGNLPPEIGNLRAILLLDLSRNQISSNIPSTISVIKTLQSLSLAHNKLYGSIPTSLGDMLSLISLDLSQNLLTGAIPNSLTSLLYLQNINFSYNGLQGEIPDGGPFKNFTAQSFMHNEALCGNPRLQVPPCRRQVKKRSLAKKLLLKCMVPIVVSITLIVACIILLKVNKRKKVENTLEKGLSTLGAQRRISYYELVQATNGFNEGNLLGRGGFGSVYQGKLPDGEMIAVKVIDLQSEEKSRTFDAECNSMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSDNYYLTFLQRLNIMIDVASALEYLHHGSPIPVVHCDLKPTNVLLDEDMVAHVSDFGIAKLMDEGQSKTHTQTLATIGYLAPEYGSKGIISVKGDVYSYGIMLMEVFTRRKPTDDMFVGDLSLKTWISGSLPNSIMEVLDSNLIQHNREQIDKNLTHISSIFRLSLNCCEYSPEERINMVDVKASLIRIKTLIFGRKTV* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3030 844 Gene3D Phosphorylase Kinase; domain 1 541 634 - -
Psa4g3030 844 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 36 836 - -
Psa4g3030 844 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 49 - -
Psa4g3030 844 SUPERFAMILY L domain-like 2 226 - -
Psa4g3030 844 Pfam Protein kinase domain 560 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3030 844 SUPERFAMILY Protein kinase-like (PK-like) 541 831 IPR011009 -
Psa4g3030 844 Pfam Leucine rich repeat 249 308 IPR001611 GO:0005515
Psa4g3030 844 ProSitePatterns Protein kinases ATP-binding region signature. 565 587 IPR017441 GO:0005524
Psa4g3030 844 SMART serkin_6 559 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3030 844 ProSiteProfiles Protein kinase domain profile. 559 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3030 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672|GO:0006468
Psa4g3030 844 SUPERFAMILY L domain-like 232 480 - -
Psa4g3030 844 Gene3D Ribonuclease Inhibitor 168 495 IPR032675 -
Psa4g3030 844 Gene3D Transferase(Phosphotransferase) domain 1 635 838 - -
Psa4g3030 844 Gene3D Ribonuclease Inhibitor 122 167 IPR032675 -
Psa4g3030 844 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 36 836 - -
Psa4g3030 844 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 4 49 - -
Psa4g3030 844 SMART LRR_typ_2 1 25 IPR003591 -
Psa4g3030 844 SMART LRR_typ_2 415 439 IPR003591 -
Psa4g3030 844 SMART LRR_typ_2 295 318 IPR003591 -
Psa4g3030 844 SMART LRR_typ_2 123 147 IPR003591 -
Psa4g3030 844 SMART LRR_typ_2 367 391 IPR003591 -
Psa4g3030 844 SMART LRR_typ_2 26 50 IPR003591 -
Psa4g3030 844 SMART LRR_typ_2 319 343 IPR003591 -
Psa4g3030 844 SMART LRR_typ_2 200 224 IPR003591 -
Psa4g3030 844 SMART LRR_typ_2 74 98 IPR003591 -
Psa4g3030 844 Gene3D Ribonuclease Inhibitor 1 121 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3030 Psa-Chr4 246665746 246668642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3030 4 839 Receptor kinase-like Gene Family AT3G47570 37.673 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa4g3030 Pkinase 4.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3030 - K13420 mtr:MTR_8g465340 1176.77