Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3025 ATGCTTCTCGCTGACTTTCTCGTTGGACTCAATGAACGTGTTGACAACGTGATGGATCTGTTACAACTTCAATCCAACATTGTCAAGGTTTTAGGGTTGTATGGGATGGGTGGTGTTTGTAAGACAACCCTTGCCAAGGCTCTTTTCAATAGTCTCGTTGGTCGTTTTGAGCGTAGATGTTTCGTTTCAAATGTGAGACACTCCTCGTCTAAAGAGGATGGTTTGCTTTCTCTTCAAACCAATATCATTAAAGATCTTTCTTCTGAAGAAGGAACTCAGAGTTTTATGGGTGATGTCAATGCTGGTATTTCTACAATAAGAAATATAGTTCGTGAAAATCGGGTTCTGCTAGTGTTGGATGATGTTGATAGTGTAAACCAGCTTGATTATTTGATTGGTAAAAGGGAATGGTTTTGTAAAGGAAGCTGTATAATAATTACATCAAGGGACACAGCTGCTTTGCCTGAAAAGCATGTCAATGAGTTGTATGAAGTCAAAGAATTGTATGATGAAGAAGCTCTACAGTTATTCAGTTACCATGCTTTGAGGAAAAAGGACCCTCCACCAAGTTTTCTGAAATTTTCAGAGGAAATTGTATCTCTTACTGGTTGCTTTCTGTGCGAGAGGAGGAGGGTACCTGAGAACCTAATGGTCATTAACCTCTCCGGCTGCTTCCAACTAGCGGAAATCCCTGATTTATCTTGGTGTCTCAGGCTGGAGAAAATTATCTTGGATAACTGCATTAATCTAAAAAAGATTCATGAATCAATTGGAAGTTTGACTACCTTGCATAATTTGAACTTGAGGCGTTGTATAAACATCACCGAGCTTCCTAGTGATGTATCTGGACTGAAACATCTGGAGATCCTAGTTCTTTCTAGTTGCACCGAGTTGAAAGCATTACCAAAACGCATAGGCCTGCTTAAATCGCTGAAAACACTTGAGGCTGATGACACTGCTATAGTAAAGTTGCCCAAGTCCATTTTTCGCTTGACCAAACTCGAACAACTTGTTTTAGATCGTTGCTCATTTATGAGAAGACTACCAAACTGCATCGGAAAATTATGTTCTTTCCAAGAATTATCTCTTATTGAATCAGGCTTAAAAAAATTACCCCACACTGTGGGATCCTTTAAAAATCTTGAGAAGTTAAGTTTGATTTCGTGTGCATCTCTCACTCAAATGCCAGATTCTATAGGAAATCTCGTATAG 1212 0.3911 MLLADFLVGLNERVDNVMDLLQLQSNIVKVLGLYGMGGVCKTTLAKALFNSLVGRFERRCFVSNVRHSSSKEDGLLSLQTNIIKDLSSEEGTQSFMGDVNAGISTIRNIVRENRVLLVLDDVDSVNQLDYLIGKREWFCKGSCIIITSRDTAALPEKHVNELYEVKELYDEEALQLFSYHALRKKDPPPSFLKFSEEIVSLTGCFLCERRRVPENLMVINLSGCFQLAEIPDLSWCLRLEKIILDNCINLKKIHESIGSLTTLHNLNLRRCINITELPSDVSGLKHLEILVLSSCTELKALPKRIGLLKSLKTLEADDTAIVKLPKSIFRLTKLEQLVLDRCSFMRRLPNCIGKLCSFQELSLIESGLKKLPHTVGSFKNLEKLSLISCASLTQMPDSIGNLV* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3025 403 Gene3D Ribonuclease Inhibitor 172 403 IPR032675 -
Psa4g3025 403 PRINTS Disease resistance protein signature 30 45 - -
Psa4g3025 403 PRINTS Disease resistance protein signature 109 123 - -
Psa4g3025 403 PRINTS Disease resistance protein signature 282 298 - -
Psa4g3025 403 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 203 IPR044974 GO:0006952
Psa4g3025 403 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 218 402 IPR044974 GO:0006952
Psa4g3025 403 PANTHER TMV RESISTANCE PROTEIN N-LIKE 3 203 - -
Psa4g3025 403 PANTHER TMV RESISTANCE PROTEIN N-LIKE 218 402 - -
Psa4g3025 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 204 IPR027417 -
Psa4g3025 403 SUPERFAMILY L domain-like 179 402 - -
Psa4g3025 403 Pfam NB-ARC domain 12 199 IPR002182 GO:0043531
Psa4g3025 403 Gene3D - 3 161 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3025 Psa-Chr4 246320386 246322306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3025 214 399 WRKY Transcription Factor Family AT5G45050 30.729 1.18e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3025 - - mtr:MTR_8g062130 319.316