Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3016 ATGACTCCTACCTTGAATGCTAATATATTAGAGAGTGATGAGTATTGGAAAGAAGAAAGGCCTGAGTTTGATTCATATTGGCAGGAAAGGGCTAAAGTTGCAAAACAAGATAATCATGCAGCTTATTTTCCTGATCCTTATGCTGTCTCCGGCAATTTTACTGCTTCTATTTCCGAAATCATAGCTGGAAAGAGCACAAGAAGGAACTTGGGTGGAGGAAAAGGAGGCGAATGTTTGGCCACAAACCCGATTGACAGATGTTGGAGGTGCGACCCTAATTGGGCTAACAACCGCCAGAAGCTTGCAGACTGTGTCCAAGGATTTGGCAGAAACACCCGCGGAGGTAAAGGCGGTCCAATCTATGTTGTCACCGATCCTTCCGACAACGAATTGTTGAACCCAAAAGTCGGCACTCTCCGTCATGCAGTCACACGTAACGGTCCCCTTTGGATCACATTCGCTCGCAGCATGTTGATCACACTCCAACAAGAGCTTATTATGACAAGCAATAAGACAATTGATGGTAGAGGAGTTGATGTTTACATTGCCAATGGAGCTGGATTCACCATTCAGTTTATTAAGAATGTTATCATCCATGGAATCAAGATTTACAACATTCAAGTCCGTGAAGGCAAGGACCAAATCAATGCTAAAGAGGTCACAAAGAGAGAATACACAGAGGAAAAAGTATGGACAAGCTGGCAGTGGAGATCCATCAACGATGAGTTTTTGAACGGAGCATTCTTTGTAAACTCCGGACCAGAACTAAAGAACAGACCATTTTCAAGGAAAGACATGATCACAGCTAAACCAGGAAGTTATGTTGGAAGACTTACAAGGTATTCTGGAATTCTAGGATGCCGTGTTGGTCGTCCTTGTTAG 882 0.4342 MTPTLNANILESDEYWKEERPEFDSYWQERAKVAKQDNHAAYFPDPYAVSGNFTASISEIIAGKSTRRNLGGGKGGECLATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTRGGKGGPIYVVTDPSDNELLNPKVGTLRHAVTRNGPLWITFARSMLITLQQELIMTSNKTIDGRGVDVYIANGAGFTIQFIKNVIIHGIKIYNIQVREGKDQINAKEVTKREYTEEKVWTSWQWRSINDEFLNGAFFVNSGPELKNRPFSRKDMITAKPGSYVGRLTRYSGILGCRVGRPC* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3016 293 PANTHER PECTATE LYASE 215 293 - -
Psa4g3016 293 PANTHER PECTATE LYASE 1 211 - -
Psa4g3016 293 Pfam Pectate lyase, N terminus 22 70 IPR007524 GO:0030570
Psa4g3016 293 PRINTS Pollen allergen Amb family signature 104 121 IPR018082 -
Psa4g3016 293 PRINTS Pollen allergen Amb family signature 128 153 IPR018082 -
Psa4g3016 293 PRINTS Pollen allergen Amb family signature 164 180 IPR018082 -
Psa4g3016 293 PANTHER PECTATE LYASE 18-RELATED 1 211 IPR045032 GO:0030570
Psa4g3016 293 PANTHER PECTATE LYASE 18-RELATED 215 293 IPR045032 GO:0030570
Psa4g3016 293 SUPERFAMILY Pectin lyase-like 82 208 IPR011050 -
Psa4g3016 293 Gene3D - 81 213 IPR012334 -
Psa4g3016 293 Gene3D - 214 286 IPR012334 -
Psa4g3016 293 SUPERFAMILY Pectin lyase-like 215 284 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3016 Psa-Chr4 245310042 245311488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3016 217 293 Polysaccharide Lyase AT1G14420 46.341 4.86e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3016 K01728 - gmx:100798579 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3016 4 245310042 245311488 Psa4g3016 4 245310042 245311488 ECH