Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3014 ATGGAGCTTACCCTTGTGAAATCTGAACTTAGTCCAAGAAGTCATAGAATTCTCATGTTGGATAATGATACTAATCCAACAACTAAATGTGTTAAAAGGCGGAGAAGAGATTCGTCGGTGTTAGGAGGGAATGAACAGCGAGGTGATATATCGGAAATACAACAGCCATTGGGTGGTCAATCTACTGCAACAACTGTGAAGAGAAGCTCGAAGTTTAGGGGTGTTAGTAGGCATGTGATAATACATAGGTGGACTGGAAGGTATGAAGCTCATTTATGGGATAAAGGGACATGGAATCCTACTCAAAAGAAAAAAGGAAAGCAAGGTGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTATTGGGGAACATCGACTTTTACAAATTTCCCCGTACCGGATTACGAGAAAGAAATTGAGATAATGATAAATATGACCAAAGAAGAGTATCTTGCTTCTTTGAGAAGGAGGAGCAGTGGTTTTTCTAGAGGTGTATCAAAATATAGAGGTGTAGCAAGACACCATCACAATGGAAGATGGGAAGCAAGGATCGGGAGAGTGTTCGGCAACAAGTATCTCTACCTCGGGACTTATGGTACGCAAGAAGAGGCGGCTCGCGCATACGATATCGCAGCCATTGAATACCGAGGCATAAATGCAGTGACAAACTTTGACTTAAGCACTTACATCAGATGGTTACGGCCAGGACCACATTCAACTGCTTCTCAAGAACAAAAGCCAAGCACAGAACCTCAAGTATCCTTTGCAGTGTCTAATTCAATCCAATCAAGACGAAACATGGATGCATCAAATTCTAGCATCAATCCAGAAAAGCTTTTGCAAGTTGAAAATACAAAGAAGCAAGAGTTTTCGAATTCTATGATCCCTTTAAGTCCTTGCAGTAAGCCATCTTCACCAACAGCGTTAGGACTTCTCCTAAAATCTTCGGTGTTTAGAGAGTTAATGCAGAGAAATTTGAACTCCTCTAACGAAGATGAACAAGAAGAAGTCGAATTGAAATGCCCGCAAGAAGGGATTAGAGGGATTTTTGATATTGACAACCAAAATAAGACTTTCTTGTGTTCTTCCAATATCAGCAGATTACCAAACTTGGTGTCAACAGAAGAGAGTTCATTGCCTATGTATCATGGAACTATGCAATCACTATGGAATGGTGCTTCCAACATTTCTAACTGA 1218 0.4064 MELTLVKSELSPRSHRILMLDNDTNPTTKCVKRRRRDSSVLGGNEQRGDISEIQQPLGGQSTATTVKRSSKFRGVSRHVIIHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVPDYEKEIEIMINMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGPHSTASQEQKPSTEPQVSFAVSNSIQSRRNMDASNSSINPEKLLQVENTKKQEFSNSMIPLSPCSKPSSPTALGLLLKSSVFRELMQRNLNSSNEDEQEEVELKCPQEGIRGIFDIDNQNKTFLCSSNISRLPNLVSTEESSLPMYHGTMQSLWNGASNISN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3014 405 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Psa4g3014 405 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 399 - -
Psa4g3014 405 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Psa4g3014 405 ProSiteProfiles AP2/ERF domain profile. 71 138 IPR001471 GO:0003700|GO:0006355
Psa4g3014 405 Pfam AP2 domain 70 130 IPR001471 GO:0003700|GO:0006355
Psa4g3014 405 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Psa4g3014 405 Gene3D AP2/ERF domain 70 139 IPR036955 GO:0003700|GO:0006355
Psa4g3014 405 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Psa4g3014 405 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 399 - -
Psa4g3014 405 SUPERFAMILY DNA-binding domain 79 139 IPR016177 GO:0003677
Psa4g3014 405 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Psa4g3014 405 MobiDBLite consensus disorder prediction 245 264 - -
Psa4g3014 405 SMART rav1_2 71 144 IPR001471 GO:0003700|GO:0006355
Psa4g3014 405 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3014 Psa-Chr4 245066871 245068849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3014 67 273 AP2-EREBP Transcription Factor Family AT5G17430 57.477 3.46e-77 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa4g3014 AP2 4.6e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3014 - - gmx:100799621 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3014 4 245066871 245068849 Psa4g3014 4 245066871 245068849 ECH