Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2960 ATGGATGAACTGGGTATGTTTGGTCAGTGGAGCAGAGAGCAAGACATGGCATTTGAAAATGCATTGGCGAATTATCCTGAGGATGATATGGATCGATGGGTGAAAATTGCGTCTGTTGTACCGGGAAAAACTTTAGGAGAGGTTATGCGTCACTATGCGATTTTGGTTGATGATGTTAGCCACATTGAATCTGGTTATGTGCCGTTACCGTGTTATAATGCGTCAAAGTCTAATAAAGAACGGCGAAGGGGTGTTCCTTGGACTGAAGATGAACACAGGTCATTTCTTATAGGCTTGGAGAAGTATGGAGATGGTGACTGGCGAAGTATATCAAGGAGGTGTGTGGTGACAAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATACAAAATTCGTCAGAAATCAATGAATCAGAAGAAAGAAAGAAGAAGGCGATCCAGCATACATGATGTCACCCTGGAGAAAAATGTAGACATTCCGGGGCCTCAAGCACCAATTACTGGTCAGGCAAGCGATTCTGCTGCAAGTTCTGCTGGACAATCAGCCACACAAGTTCCTCCACCTCCACCTGCTGGAATGTTAGCTGCAGCCGCACCTGCTGGAATGCATGCCTCAGCCGCGCCTGCTGGAATGCATGCCTCAGCCGCACCTGCTGGAATGCATGCCGCAGCGGCACCTGCTGGAATGTATGCTGCAGCCCCACCTGCTGGAATCAAAACTTTAGATAATCCTCCGGCCCCACCTGTTGGAATCAGAACTATAGATAATCTTCCTGCCCCACCTGCTGGAATTTATGCTGCTCCTGGGATCTGGAAACCTGTAGGAGGACCGGTTGTATCTGCAGATGGCACCACTCCAGTGAATCTTACTGCTTCTGGACACACGGCTTATGGTCATGCGCCGGTTTCTGGGACAGGTATTCAGGAGGCACCAATGAACTTTAGTTCTCTGAAATATATCATGCAACATACATCTACTCGCTCGTGA 990 0.4808 MDELGMFGQWSREQDMAFENALANYPEDDMDRWVKIASVVPGKTLGEVMRHYAILVDDVSHIESGYVPLPCYNASKSNKERRRGVPWTEDEHRSFLIGLEKYGDGDWRSISRRCVVTRTPTQVASHAQKYKIRQKSMNQKKERRRRSSIHDVTLEKNVDIPGPQAPITGQASDSAASSAGQSATQVPPPPPAGMLAAAAPAGMHASAAPAGMHASAAPAGMHAAAAPAGMYAAAPPAGIKTLDNPPAPPVGIRTIDNLPAPPAGIYAAPGIWKPVGGPVVSADGTTPVNLTASGHTAYGHAPVSGTGIQEAPMNFSSLKYIMQHTSTRS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2960 329 PANTHER TRANSCRIPTION FACTOR SRM1 6 325 - -
Psa4g2960 329 CDD SANT 10 52 IPR001005 -
Psa4g2960 329 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Psa4g2960 329 PANTHER TRANSCRIPTION FACTOR KUA1 6 325 - -
Psa4g2960 329 SMART sant 83 133 IPR001005 -
Psa4g2960 329 SMART sant 6 58 IPR001005 -
Psa4g2960 329 Gene3D - 85 137 - -
Psa4g2960 329 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
Psa4g2960 329 MobiDBLite consensus disorder prediction 120 164 - -
Psa4g2960 329 CDD SANT 86 131 IPR001005 -
Psa4g2960 329 Gene3D - 8 55 - -
Psa4g2960 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Psa4g2960 329 SUPERFAMILY Homeodomain-like 81 136 IPR009057 -
Psa4g2960 329 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Psa4g2960 329 Pfam Myb-like DNA-binding domain 86 131 IPR001005 -
Psa4g2960 329 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 83 134 IPR006447 GO:0003677
Psa4g2960 329 ProSiteProfiles SANT domain profile. 82 135 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2960 Psa-Chr4 239018154 239021523 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g2960 Myb_DNA-binding 1.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2960 - - vri:117923943 259.225