Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2950 ATGAATGTTACTCGTTCTGCTCTGAAGCTCCATCTTCAAACCTCACCAATTCGCTACCAATTCTTCTTCTCACGCTTCAACAATGCTCTTCGCAATCCCACTTCGTCTTCTTCTCTGTTCAATTTCAAAGCAAAGCGCTTCTTTTCTGTAACCCTTCCACGCCAAACGCAGAAGCAACCCTTTGTTGGAACCGCCGTTTCATCAACTTCGTCGGAAGATTTCAAAGGCCGTGACACTTTCTTTGCTGAAGATAACGTTTCGTGGAGTTCACTTGGCTTATCTGATACAATCTCTGGTGCTCTCTCTAGTATTGGTCTTAAAACACCTTCTCTTGTTCAGGCTTCTTCTATACCACCTGTTTTGTCAGGGAAGGATGTAGTTATTGCCGCGGAGACCGGAAGTGGCAAGACATACAGTTATCTACTTCCTCTCATTGATAAGCTGAGGGACGCACAGGAACAATCTTTGGATGTTGTATCTGACAAAGAAGTCTATCCACCGGCTGGGAATATTCTACTTGTGCTTTGTCCAAATGTGCAACTGTGCGAGCAGGTAGTTAAGATGGCTAATAGTCTCTGTAGCGACAATGGTGGAACCATTGTTAATGCGGCGTCCATTTGTGGAAGACAGGGATGGCCGATTCGGGAACCTGATATCATTGTGACAACACCTGCTGCTCTTCTCAATCATGTTGACGTTGATAGAAGGCGGCGCATGGAATTTATGCGCGGTGTCAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGAAGCTTCCAGAATAAAGTAATCCGCCTCATTCAATTACTCCGCTATGATGAAAAACTCTTGTCTCGATCAAAAACACCAGTATCAGAGTTGGCAACGAAGCTGGAGGAATCTTCTTTGTCGACGGACGATGCTTTGGATTTGGAAGGTGAAGATGAACTTCCACCTGAAGCCATCTCAGACGAAGATGATGATGATAAAGAGGATATTGTCATTATTAATGACGAAGCTGAATCTGTTAAGAAAACAAGAAGAGAGTGGAGGAGAGTGAGGAAACATTATGAGCGTAGTAAACAGTATGTTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGTGCATTATTAAAACACATGTTTTCTGATGCTGAGTGGGTTAGTGGAAACTATCTTCATCGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGAGCGTTGATACACAGGTGAAAGAACTCATAAATGCTGTGAATCACGGTTTAGAATCTGAAGATTTGGATACTGATGGTGGCATTCATAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGCTGAAGCTGTGGCAAAGATATTGAACTATACTGGGCTTGAATGTTTACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAGACATTAGTTGATTTCCACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCAAATGTCTTGCATGTTATTCAGGCGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATCGGTCGTACAGCTAGAGCTGGTCAAAACGGACTAGTTACTAGCATGTACACCGAGTCCAACAGGGAGCTTGTACAGGCAGTTCGTCAAGCAGGGGAACTCGGTCTACCTGTGGAGACCGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTTAAAAAGAAAGCAAATGCTGACAAAGTTAGAGATTCAGCAGCCATTGAAAAGAGTGTTCCAGCTTGA 1782 0.4332 MNVTRSALKLHLQTSPIRYQFFFSRFNNALRNPTSSSSLFNFKAKRFFSVTLPRQTQKQPFVGTAVSSTSSEDFKGRDTFFAEDNVSWSSLGLSDTISGALSSIGLKTPSLVQASSIPPVLSGKDVVIAAETGSGKTYSYLLPLIDKLRDAQEQSLDVVSDKEVYPPAGNILLVLCPNVQLCEQVVKMANSLCSDNGGTIVNAASICGRQGWPIREPDIIVTTPAALLNHVDVDRRRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLIQLLRYDEKLLSRSKTPVSELATKLEESSLSTDDALDLEGEDELPPEAISDEDDDDKEDIVIINDEAESVKKTRREWRRVRKHYERSKQYVFVAATLPVNGKKTAGALLKHMFSDAEWVSGNYLHRHNPRLKQRWIEVSVDTQVKELINAVNHGLESEDLDTDGGIHRTMVFANTVEAAEAVAKILNYTGLECLRYHKNCTLEERAQTLVDFHEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRIGRTARAGQNGLVTSMYTESNRELVQAVRQAGELGLPVETAFSRKRSFRNKLKKKANADKVRDSAAIEKSVPA* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2950 593 Pfam Helicase conserved C-terminal domain 435 528 IPR001650 -
Psa4g2950 593 CDD DEADc 100 293 - -
Psa4g2950 593 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 55 564 - -
Psa4g2950 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Psa4g2950 593 SMART ultradead3 105 402 IPR014001 -
Psa4g2950 593 MobiDBLite consensus disorder prediction 290 319 - -
Psa4g2950 593 Gene3D - 63 382 IPR027417 -
Psa4g2950 593 CDD SF2_C_DEAD 399 537 - -
Psa4g2950 593 MobiDBLite consensus disorder prediction 300 319 - -
Psa4g2950 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 411 569 IPR001650 -
Psa4g2950 593 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 564 - -
Psa4g2950 593 SMART helicmild6 448 528 IPR001650 -
Psa4g2950 593 Gene3D - 400 592 IPR027417 -
Psa4g2950 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 540 IPR027417 -
Psa4g2950 593 Pfam DEAD/DEAH box helicase 112 273 IPR011545 GO:0003676|GO:0005524
Psa4g2950 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 383 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2950 Psa-Chr4 237833355 237838993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2950 486 545 Eukaryotic Initiation Factors Gene Family AT3G13920 38.333 2.80e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2950 - - gmx:100780518 825.854