Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2945 ATGCATAGCCTTCCAACCAAGACAGTATCTCTCCTCACCAACCACTCCCTTCCATATTCAAACACTCACTCCCCCTCTTCCTGCAAACTCACCAACCTGCCGGCGATTTCCCGATCGTTTTCGGCGACTTCAAATGGCCAAGCAATGAATGAACAGCCATTACCGGCGATCCTCATGCCTCTCTCTTGCGTCTCCGACGGCGACCTCCTCTGCGGAGAGGACACATCCGAAATCCTTACCGGAGACTCGACGGAATACTCCTCCGATCTCGATTCATCATCGCCGTCGTCGTCATTATTCGCGGAGGAGGAAGAGTCCATTGCCATTTTTATCGATCACGAGCGTAAGTTCGTCCCTGGATTCGATTACCTCTCAAGATTCCAATCTTGTTCTCTAGATGCCAACGCCAGAGAAGAATCAGTTGCATGGATTCTCAAGGTACATGCATACTATGGTTTTCAGCCGTTGACGGCGTACCTTTCCGTTAACTATATGGATCGGTTTTTGGATTCTCGAACTTTACCGGTGAGCTCTCGTGAGGAATCAAATGGATGGCCTCTGCAACTTCTATCAGTTGCATGTTTGTCTTTAGCAGCAAAGATGGAGGAACCCCTGGTTCCTTCTCTCTTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTCAACCGCGAACGATTTTAAGAATGGAGCTACTTGTTCTAACTGTGTTGGATTGGAGGCTAAGATCAGTCACCCCGCTTAGCTTCCTTAGTTTCTTTGCGTGCAAATTAGATTCAACTGGAGCATTCACCGACTTCCTTATTTCTCGTGCTACAGAAATAATCTTATCTAATATCCAAGAAGCTGGCTTTCTTGCTTACAGGCCATCATGCATTGCTGCAGCTGCAATACTCTCTGCAGCCAATGAAATTCCTAATTGGTCTTTTGTTAAGCCTGAACATGCTGAGTCATGGTGTGAGGGCCTAAGAAAAGAAAAGATTATAGGGTGCTATGAGTTGATGCAAGAAATTGTGATAAGCAATAACCAAAGAAATCCACCTAAAGTGTTGCCACAGCTGCGAGTAACAACTCGAACCCGAAGGTGGTCTAATGTCTCATCATCATTTCCATCTTCCTCCTCTTCACCCTCTTTCTTATTATCTTATAAAAAAAGGAAATTAAATAGTAACTGCTTCTGGGTAGATGATGACAAAGGAAACTCTGAGTGA 1209 0.4516 MHSLPTKTVSLLTNHSLPYSNTHSPSSCKLTNLPAISRSFSATSNGQAMNEQPLPAILMPLSCVSDGDLLCGEDTSEILTGDSTEYSSDLDSSSPSSSLFAEEEESIAIFIDHERKFVPGFDYLSRFQSCSLDANAREESVAWILKVHAYYGFQPLTAYLSVNYMDRFLDSRTLPVSSREESNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFQPRTILRMELLVLTVLDWRLRSVTPLSFLSFFACKLDSTGAFTDFLISRATEIILSNIQEAGFLAYRPSCIAAAAILSAANEIPNWSFVKPEHAESWCEGLRKEKIIGCYELMQEIVISNNQRNPPKVLPQLRVTTRTRRWSNVSSSFPSSSSSPSFLLSYKKRKLNSNCFWVDDDKGNSE* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2945 402 Gene3D - 111 305 - -
Psa4g2945 402 SUPERFAMILY Cyclin-like 103 241 IPR036915 -
Psa4g2945 402 Pfam Cyclin, N-terminal domain 107 241 IPR006671 -
Psa4g2945 402 ProSitePatterns Cyclins signature. 137 168 IPR006671 -
Psa4g2945 402 Pfam Cyclin, C-terminal domain 244 350 IPR004367 -
Psa4g2945 402 Gene3D - 120 242 - -
Psa4g2945 402 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 64 377 - -
Psa4g2945 402 SMART Cyclin_C_2 244 371 IPR004367 -
Psa4g2945 402 CDD CYCLIN 143 234 IPR013763 -
Psa4g2945 402 SUPERFAMILY Cyclin-like 225 343 IPR036915 -
Psa4g2945 402 SMART cyclin_7 142 235 IPR013763 -
Psa4g2945 402 PANTHER CYCLINS 64 377 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2945 Psa-Chr4 237009052 237011721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2945 59 401 Core Cell Cycle Gene Families AT1G70210 58.671 5.46e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2945 K18810 - gmx:100778578 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2945 4 237009052 237011721 Psa4g2945 4 237009052 237011721 ECH