Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2942 ATGGGTTCCCAACTTATTGGTATTGTGGCGATTCCAATGGAACAAACATACTCAGGGGAACAAGTTGAAGGAACTTACCCTATGCTGAACAATAATGGGAAGCCTTGTAAGCAAGGTGCTAAACTGAGCTTATCCATTCACTACATCCCAATGGAGCAATATCCTGGTATGGAGTTGGCCAAATTATGTGTTGGTGAAAATGTTCCAGTTGTTCCAATCCCAGGTCCTTGTGCTTTGGTATCTGCTCTTTCTGCCTCTGGTTTATCCATTGATGAATTTACATTTGTTGGTTTTCTTCCAAAAACATTCGGGATCAAGAAGAAAAAGGCTCATGGCTTCGATGGAGCAAACAATAACACAAATATTTGA 369 0.4065 MGSQLIGIVAIPMEQTYSGEQVEGTYPMLNNNGKPCKQGAKLSLSIHYIPMEQYPGMELAKLCVGENVPVVPIPGPCALVSALSASGLSIDEFTFVGFLPKTFGIKKKKAHGFDGANNNTNI* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2942 122 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 109 IPR008189 GO:0008168
Psa4g2942 122 SUPERFAMILY Tetrapyrrole methylase 55 108 IPR035996 GO:0008168
Psa4g2942 122 Gene3D - 75 120 IPR014776 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2942 Psa-Chr4 236155328 236155951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2942 1 53 Phospholipase D Gene Family (Wang group) AT2G42010 69.811 3.39e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2942 - - gmx:100801286 92.0485