Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2939 ATGACCCCTTTAATTATCTTCATCATAGTAATTTTAGCTATTGTGTTTTTCATCTCTGGTGTCCTCCAACTGTTTGTTAGATTTCTCATACGAAAAAGATCTTCTTCAAGAGCTTCACAATCCAATAATAATAACTACCCTCAAATGTCTGAACCTGATCCTTATCAGAGACAGTTGCAGCAACTCTTCAATCTTCATGATTCTGGCTTAGATCAAGCTTTCATTGATGCTCTACCGGTTTTCCTTTACAAAGAGATAATAGGTTTGAAAGAGGTTTTTGATTGTGCTGTTTGTCTTTGTCAATTCACAGAACAGGACATGTTGAGATTGTTGCCTCTTTGTAATCATGCTTTTCATATTGATTGCATAGATACATGGCTTCTTTCTAATTCAACTTGTCCTCTTTGTAGAGGAAGTCTTTATGAACATGGATTTGCTTTTGAAAATCCGGTTTATGATGAGTTTGAGAATCTAAGTGAAGAGAATATGGTTTCTGGCAATGTTGTTGGTGAGGGCAACTCTGTTAACAGGCATGCGGAAAATCATATAATGAGTGGGAAAAGAGTTTTTTCGGTTAGGCTTGGAAAATTTAGAAGCTCAAATAATGGAGAAGGGGGTGTGGAAAGAAGTGAAGGAGAGTGTAGTGGTAAAAGTGTTGTTGGTGATGTTAGGAGATGCTTTTCAATGGGTTCTTACCAATATGTAGTTGCTGATTCAGATTTGGTAGTGGCTTTGTGTCCTAATAGAGGTGAAGGGAGAGGAAAAAGTGCTAGTATGAGACAATTGAAAGGAGGGCTTGCTCAAAATGGGAATTGTTCCATTGATGTGGATGTTGTTGAAGGGAAAAAGATAAATGTTGCTAGGAAAGGTGAAAGCTTTTCTATTTCAAAGATTTGGTTGTGGTCTAGGAAGGATAAGGTATCAAGTTCATCACAATCCCATTTGGTTAATTCTAATGTCACTTCAACTTTGCCATGGATGAATAGAGAACTCAAGGAAGCAACTTAG 1008 0.372 MTPLIIFIIVILAIVFFISGVLQLFVRFLIRKRSSSRASQSNNNNYPQMSEPDPYQRQLQQLFNLHDSGLDQAFIDALPVFLYKEIIGLKEVFDCAVCLCQFTEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEHGFAFENPVYDEFENLSEENMVSGNVVGEGNSVNRHAENHIMSGKRVFSVRLGKFRSSNNGEGGVERSEGECSGKSVVGDVRRCFSMGSYQYVVADSDLVVALCPNRGEGRGKSASMRQLKGGLAQNGNCSIDVDVVEGKKINVARKGESFSISKIWLWSRKDKVSSSSQSHLVNSNVTSTLPWMNRELKEAT* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2939 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 326 - -
Psa4g2939 335 SMART ring_2 95 136 IPR001841 -
Psa4g2939 335 Pfam Ring finger domain 94 137 IPR001841 -
Psa4g2939 335 SUPERFAMILY RING/U-box 74 143 - -
Psa4g2939 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 326 - -
Psa4g2939 335 CDD RING-H2_PA-TM-RING 94 137 - -
Psa4g2939 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Psa4g2939 335 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2939 Psa-Chr4 235525896 235528329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2939 20 311 C3H Transcription Factor Family AT2G18650 39.937 1.88e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2939 - - gmx:100818135 441.425