Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2927 ATGCGAGCAGCATCTTCACGGGGACCATTGTTGACGATGGCAGCAACAATAACCTCAATTGGGTTCTGGTCAGAGAAAAATAAACCTGTGCCGTTTTTGTTACTCTCTTTGGCGTTGGACGTGATTGACGTAGAGAGTGGGAGGATTGTGATGACTGACATTGTGTGTAATCTGTTGAGGACTGTTATACACGCCGCACCCGAGGATCTTGTTTCGGTTGTTTATTTATCTGCAAACAGAATTGCTCCGGCTCATGTAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATTAATCTCTTGCTTGAGTCTATGAAGACCGAAAACAGATTAAGCAGAAGCCAAGTCACAAGAGAAAAAGTGAACTTGGGTCTTATTGCAAAAGCTTCGCGCCTCGTCACATGGGGCAATTCAAGCATAGCAGTTGGAGAGTTGATGCTTTTTCCTTATGGTGTTCAAAAGGAAAACTTGAATAGTTATCAAAGATGGAACCAGGAATCTACTCTTAGTGCAGCAGATATATATGCAGTGATAGGAAGTCCACCTATATTCCGTTGGAGGTATGGTTGGTTCTCTAATGCTGAGCACGGAACATTAAATATGCAAGCACCTGTAGCATCCGGTTACATATTTAGACAATCCAAAATTGGTGGTGATAACACGATGGATCAGATTGTGAATTTCGCACCGTTTCCTATGCCATCAACTGATAATTACTCTACGGAATGGGGCAATTCAAGCATAGCAGTTGGAGAGTTGATGCTTTTTCCTTATGGTGTTCAAAAGGAAAACTTGAATAGTTATCAAAGATGGAACCAGGAATCTACTCTTAGTGCAGCAGATATATATGCAGTGATAGGAAGTCCACCTATATTCCGTTGGAGGTATGGTTGGTTCTCTAATGCTGAGCACGGAACATTAAATATGCAAGCACCTGTAGCATCCGGTTACATATTTAGACAATCCAAAATTGGTGGTGATAACACGATGGATCAGATTGTGAATTTCGCACCGTTTCCTATGCCATCAATTGATAATTACTCTACGGAGTGCTCTGTAGATTGTGGAACATCCTGA 1077 0.4178 MRAASSRGPLLTMAATITSIGFWSEKNKPVPFLLLSLALDVIDVESGRIVMTDIVCNLLRTVIHAAPEDLVSVVYLSANRIAPAHVGLELGIGDASIINLLLESMKTENRLSRSQVTREKVNLGLIAKASRLVTWGNSSIAVGELMLFPYGVQKENLNSYQRWNQESTLSAADIYAVIGSPPIFRWRYGWFSNAEHGTLNMQAPVASGYIFRQSKIGGDNTMDQIVNFAPFPMPSTDNYSTEWGNSSIAVGELMLFPYGVQKENLNSYQRWNQESTLSAADIYAVIGSPPIFRWRYGWFSNAEHGTLNMQAPVASGYIFRQSKIGGDNTMDQIVNFAPFPMPSIDNYSTECSVDCGTS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2927 358 Pfam DNA ligase N terminus 31 131 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa4g2927 358 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 22 109 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa4g2927 358 PANTHER CRAMPED PROTEIN 135 225 - -
Psa4g2927 358 PANTHER CRAMPED PROTEIN 241 333 - -
Psa4g2927 358 Gene3D - 20 177 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2927 Psa-Chr4 234916043 234918061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2927 25 131 Core DNA Replication Machinery Family AT1G08130 56.481 2.38e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2927 K10747 - aprc:113857455 170.629