Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2920 ATGGAAGCTAAGAGTGGCCTCTTTGCAGGGTCTCTTAACAGTAATGAACTTGTTATCATCCAAGAACACAATGAGCCTAAGACAGTGAAGAACTTGGATGGTCAAGTATGTGAGATATGTGGTGATTCTGTAGGACTTACAGTAGATGGAGATTTGTTTGTAGCTTGTGAAGAGTGTGGCTTCCCTGTCTGCAGGCCATGTTATGAGTATGAAAGAAGAGAAGGCACACAAGTTTGCCCTCAATGCCATACTAGATACAAGCGTATCAAAGGTAGTCCAAGAGTGGTGGGAGATGAAGATGAAGAAGATGTGGATGATATTGAGCAAGAATTTAAAATGGAAGAGGAAAAGTACAAGCTTATGCATGAAGAGGATATGGATAGTAGAGATGATGATGATGACAATACTAAATATCGGGAGCTTCCCGGTGGTGCAAAAATAGATCAGAATGAGAAAACAGATGAGTGGAAGTTGCAGCAAGGCAATCTGTTGATTGAAACTGATGCAGTTGATCCTGAAAAAGCCATGAAAGATGAAACTAGACAGCCACTTTCAAGAAAAGTGGCAATACCTTCAGGAAAACTGAGTCCTTATAGAATGATGGTTGTGGCTAGGCTCATCCTTCTAATACTCTTCTTTGAGTACAGAATGTTCCATCCAGTACCTGAAGCAATTGGACTATGGTTCATATCAGTCTCATGTGAAATCTGGCTCGCATTGTCATGGATGGTTGATCAGATTCCCAAATGGTTCCCCATTGATCGCGAAACGTATCTCGATCGCCTTTCAGTCAGGTTTGAACCGGAAAACAAGCCGAATATGCTATCTCCGATAGATATCTTTGTAACAACGGTAGATCCAATCAAGGAACCACCTCTTGTTACCGCAAATACTATTCTTTCAATTTTGGCACTAGATTATCCTGCGCGCAAAATCTCATGCTACGTTTCTGATGACGGTGCTTCTATGCTCACCTTTGAAGCTCTTCAAGAAACGGCTGAATTTGCGCAAAAATGGGTACCTTTCTGTAAAAAATTCTCTGCGGAACCTCGAGCTCCCGAGAAGTACTTCTCGGAGAAGATAGACTTTCTGAAGGATAAGGTTCAAACCTCGTATGTAAAAGAACGCCGAACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGAATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCGTCCGAAGGGTGGAGTATGAAAGACGAAACACCGTGGCCCGGAAACAATACAAAAGATCATCCAAGTATGATTCAAATCCTTCTTGGTCATAATGGAGGAGACAATGAAGGGAATGAACTTCCATCTCTTGTCTACATCTCTAGAGAGAAAAGGCCTGCATTTCAACATCACACAAAAGCCGGTGCAATGAACGCGCTGCTTCGCGTATCGGCGGTGTTGAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTGAACAACAGCAAAGTTGTGAGAGAAGCCATGTGTTTCTTTATGGACATACAACTTGGGAATAGTATAGCTTTTGTCCAGTTTCCTCTAAGATTCGATAGCCTTGATAAGAATGATCGTTACGCCAACAAAAACACCATTTTATTTGATATTACCCTGAGGTGTCTAGATGGAATTCAAGGACCTGTTTATATAGGATCAGGTTGTATATTCAGAAGAAAAGCTTTAAATGGATTCGAACCTCCTAAGACATCGAAACGCTCTCGAATCGTACAAGTTCACTCAAAACAAGATGAAAATGGAGAGGATGCAAGCATTATAGAAGCAACTGATGAAGATAAGCAGCTACTGCAATCAGATATGAACACTGAAGATAAATTTGGAAAGTCTACACTCTTCATGAATTCTTCATTAACAGAAGAAGGTGGAGTAGATCCTTCTTCAACTCAAGAAGCCTTGCTTAAAGAAGCCATTCATGTCATGAGTTGTAGCTACGAAGACCGAACTCTTTGGGGATACGAGGTTGGTATGAGCTACGGGTCTATAGCAGCCGATACTCTAACAAGTTTGAAAATGCATACTCGCGGTTGGAGATCGGTATACTGCATGCCAAAGAGAGCTGCATTTAGGGGAACAGCACCAATCAATCTTACAGAAAGACTTAACCAAGTTCTTAGATGGGCAGTAGGATCACTCGAAATCCTATTCAGCCGCCACTGTCCGTTGTGGTATGGTTTTAAAGAAGGAAGACTCAAGGTTCTCCAGAGGATCGCCTATATTAACAGCACTGTCTACCCTTTTAGCGCATTACCTCTCATCATCTATTGTATCATTCCCGCCGTCTGCTTGCTTACAGATAAATTCATCACACCGTCGGTAGGAACTTTTGCGAGTCTAGTATTCATTTCTCTATTCATTTCAATCTTTGCATCGGCTATTCTTGAGTTGAGATGGAGTGGAGTTAGTCTCGAGGAATGGTGGAGAAATCAACAGTTTTGGGTCATTGGAAGTGTATCAGCGCACCTCTTTGCAATCGCGCAGCGCCTAATGGGAAGATTCCTCGGAAAAGTTAACGCACATTTCAGCATTGTATCGAAGGCGCCAGACGACGATGGGCAGTTTAACGAGCTGTACACGATTAGATGGACAGCATTGCTAATACCTCCAACAACAGTCACAATAATCAACCTTATTGGCATTGTGGCGGGTTTCACAGATGCTATAAATAGTGGTGAACATGAATGGGGACCATTGATTGGAAAACTGTTCTTTTCTTCATGGGTTATTGCTCATCTTTATCCTTTTCTTAAAGGACTAATGGGGAGACAGAATAGAACACCAACTCTTATTGTTATTTGGTCTGTGCTTTTGGCTTCTATATTCTCTTTGGTTTGGGTGAGAATTGATCCTTTTGTGTTGAAAACTAAAGGGCCTGATGTTAAACAGTGTGGAATTAGTTGTTGA 2928 0.4156 MEAKSGLFAGSLNSNELVIIQEHNEPKTVKNLDGQVCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVVGDEDEEDVDDIEQEFKMEEEKYKLMHEEDMDSRDDDDDNTKYRELPGGAKIDQNEKTDEWKLQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGKLSPYRMMVVARLILLILFFEYRMFHPVPEAIGLWFISVSCEIWLALSWMVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFVTTVDPIKEPPLVTANTILSILALDYPARKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKKFSAEPRAPEKYFSEKIDFLKDKVQTSYVKERRTMKREYEEFKVRINALVAKSMRVPSEGWSMKDETPWPGNNTKDHPSMIQILLGHNGGDNEGNELPSLVYISREKRPAFQHHTKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDKNDRYANKNTILFDITLRCLDGIQGPVYIGSGCIFRRKALNGFEPPKTSKRSRIVQVHSKQDENGEDASIIEATDEDKQLLQSDMNTEDKFGKSTLFMNSSLTEEGGVDPSSTQEALLKEAIHVMSCSYEDRTLWGYEVGMSYGSIAADTLTSLKMHTRGWRSVYCMPKRAAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPLWYGFKEGRLKVLQRIAYINSTVYPFSALPLIIYCIIPAVCLLTDKFITPSVGTFASLVFISLFISIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHLFAIAQRLMGRFLGKVNAHFSIVSKAPDDDGQFNELYTIRWTALLIPPTTVTIINLIGIVAGFTDAINSGEHEWGPLIGKLFFSSWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2920 975 Coils Coil 97 124 - -
Psa4g2920 975 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 419 571 IPR029044 -
Psa4g2920 975 SUPERFAMILY Nucleotide-diphospho-sugar transferases 290 768 IPR029044 -
Psa4g2920 975 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 975 - -
Psa4g2920 975 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Psa4g2920 975 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Psa4g2920 975 Coils Coil 376 396 - -
Psa4g2920 975 Pfam Cellulose synthase 278 579 IPR005150 GO:0016020|GO:0016760|GO:0030244
Psa4g2920 975 Pfam Cellulose synthase 591 969 IPR005150 GO:0016020|GO:0016760|GO:0030244
Psa4g2920 975 SUPERFAMILY RING/U-box 22 105 - -
Psa4g2920 975 PANTHER CELLULOSE SYNTHASE 1 975 - -
Psa4g2920 975 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2920 Psa-Chr4 234307436 234312283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2920 1 975 Cell Wall Biosynthesis AT5G17420 64.175 0.0 1379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2920 K10999 - gmx:100777270 1618.21