Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2892 ATGAGTGGTATTATGGACATTGTTGAATTGCTTAGCCCCTTTGTTGAGACTAAAGCTTGGGACTATGTTGTTGTTTGGAAATATGGAAATGACCCAACTAGGGATACCCTCTTTCCCCATCCAGTTAGAACAAAGACTTGTGAGGCTCTTGCAAAGCTTCCTTTTGCAATGTCTCTTTATTCTAGTGTTCATGGAGAGGTTGCAATTTCACAGCAACCAAGATGGCTTATCCAAGAGGACTCAATTGGAACTCAAGTTTTGATCCCTATTTTGGGTGGTCTTGTGGAGCTCTTCACAGAAAAGCCGATCCCAAGAGATATAAACATCGTAGAGTTCATATCGGCATTTTGTTGTGTCTCTATCAAGCAAGAAGCCATGTCTGCACAGAGCTACACCAACATGAACTTCAATGAGCATTATTACCCTTTAACTCCCGGTCTATCTGCAGAAAACCATAGCAGCTCTAATCCTAGCATTGAAGGACCCTCCAATGGATCTAATCCTTCAATAGAACACTTATTATTTGATTCAAAGTTTGAATGCTTGGTTCCACATGAATGTCTGAATCAACCAGTTGAAATATCTCCTATATCAAAAGTTAAAAGCCAAGGATACAACAAGACTTTGAGTTTCCATTATGGAAATGGCGAAGAAGATAAAGAAGAATCTGCTAAGGAGCCTCAAAAGGAAATGTATCATGCTAAAAATCTTATCACAGAGAGGAATAGGAGGAACAGAATTAAAAAGGGGCTTTTTATTCTAAGGTCTCTAGTCCCTAATATAACCAAGATGGATAGAGCAGCAATTCTTGATGATGCAATTGAATACATAAAGGAATTGCAGAGGCAGAAGATAGAACTTCAAGAAAAGGTTGATGTTTTAGATGTTGAGGATTGTAAAAAGAACACACTACAAATGAGTGTGCAAGGAGACAAGGAACAACCACTCAGTGAGCTTAATCAAAGTTCTTCTTATTCCATTAGAAAGACAGAGATGGAGTTGCAAGTAGAAGTGAATCATGTTGGTGAAACAAGTCTCATGATCAAGTTGTGTTGTGAAATGAAGCGAGGTGGGTTTTCAAAGTTGATGGAAGCTATAGATTCATTTGGACTGCATGTGGTAAATGCAAACATGACCACAATTAATGGCAAAGTCCTGATCATTCTAATGGTTGAGGCAACTCCCCAGGATATTCACTCGACAAAACTCAGAGAGTATTTGATACAGCAAACAAGTTGA 1239 0.3874 MSGIMDIVELLSPFVETKAWDYVVVWKYGNDPTRDTLFPHPVRTKTCEALAKLPFAMSLYSSVHGEVAISQQPRWLIQEDSIGTQVLIPILGGLVELFTEKPIPRDINIVEFISAFCCVSIKQEAMSAQSYTNMNFNEHYYPLTPGLSAENHSSSNPSIEGPSNGSNPSIEHLLFDSKFECLVPHECLNQPVEISPISKVKSQGYNKTLSFHYGNGEEDKEESAKEPQKEMYHAKNLITERNRRNRIKKGLFILRSLVPNITKMDRAAILDDAIEYIKELQRQKIELQEKVDVLDVEDCKKNTLQMSVQGDKEQPLSELNQSSSYSIRKTEMELQVEVNHVGETSLMIKLCCEMKRGGFSKLMEAIDSFGLHVVNANMTTINGKVLIILMVEATPQDIHSTKLREYLIQQTS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2892 412 CDD ACT_UUR-ACR-like 346 409 - -
Psa4g2892 412 Gene3D - 218 297 IPR036638 GO:0046983
Psa4g2892 412 PANTHER TRANSCRIPTION FACTOR BHLH90 34 412 - -
Psa4g2892 412 Pfam Helix-loop-helix DNA-binding domain 238 281 IPR011598 GO:0046983
Psa4g2892 412 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 34 412 - -
Psa4g2892 412 Coils Coil 270 297 - -
Psa4g2892 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Psa4g2892 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 295 IPR036638 GO:0046983
Psa4g2892 412 SMART finulus 237 286 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2892 Psa-Chr4 231577850 231580276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2892 2 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 27.668 1.12e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g2892 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2892 - - mtr:MTR_8g064700 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2892 4 231577850 231580276 Psa4g2892 4 231577850 231580276 ECH