Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2890 ATGGCTGAAATTCAAAAAAAAAACAAAAAAAAACGTCCTTCATCTCCATTTCCAATTCTCAAAGATCCCAATAAACAATTAAACAGGTCAAATCATGGCAAAGAATCAGCTCCATCGCCTGAATCCGATCCTCCAACAAGTTCACCATCAGACTCCACGCTGCCGCCGCCTCGGCCGAAGTCACCTTTGAAGCCTGAAGTTTTACCGCCATCAGAACCACCTTCACTGCCACCACCATCACCAACACCAACACCATCACCATCACCATCACCACCGCCACCATCCTCACCACCACCTCCAAAATCTTCACCGCCGCCTCCTTCAGAATCCCCACCGCCACCTTCTCCTCCAGCACCACAATTATCACCTCCGCCTGTGCACAATTCAAACTCTTCAACATCTCCTCCTCGTTTATCACATAAACCACCACCTCCCTCGCCTCCTGAGAGGCCTTCTTCATCATCCTCATCATCTTCTTCATCTCCTCCACGGAATGATTCTCCACGTCAACCTATGCTTGCAAAGTCAAGAGATTCTCAATCCCATGTATCCTCGCCGGCCGAAATAGTTGGTTATACCCTCACCGGAGTTTTGGTTGTCGCCTTAGTTGTCTTAGCGGTTTTTTTCACGTTTAAGAAGAAGAAAACGAAAGGGGATACCTATGGTGGAGCCTTTATGCCACCCCCTGGTACTAGCTTTCAGGTTAAATCAGGTGCTGATGGACTTTACTATGTAAAGCAACCTAACGGCAACGGGAACGCTGGAGTAAACGGCAAGAAGCATATAAGTCGAGGTTCCGTGGAATCTGTACAGCCCCTAAGTGCTCAAGTAGTTTTTAGTTATGACACGGTAAAAGAAATAACCAATGCATTTTCTAGTCAGAATGTGATAGGGGAAGGAGGATTTGGGTGTGTTTACAAGGGTTGGCTGCCGGACGGAAAAGAAGTGGCGGTCAAGCAGCTTAAGGTTGGTAGTGGGCAGGGAGATAGGGAATTCAGGGCTGAAGTGGAGATCATTAGCCGTGTTCATCATCGACATTTGGTATCATTGGTTGGTTATTGCATAGCTGAGCAGCAAAGAGTACTTATATATGAGTTCGTTCCTAATGGAAATCTTCATCATCACTTGCATGGAAGTGGAATGCCAGTGTTGGATTGGGCCAAAAGGCTAAAGATAGCCATTGGTGCTGCAAAGGGTCTGGCATATCTGCATGAGGACTGCAGCCAAAAGATAATTCACAGAGATATTAAATCACCCAACATACTTCTGGATGATGCTTTTGAGGCACAGGTTGCAGACTTTGGGCTTGCAAGGCTAACAGATGCTTCCAATACCCATGTATCAACTAGGGTTATGGGTACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACTGATAAATCAGATGTTTTCTCATTCGGGGTTGTCCTCCTTGAGCTTGTAACCGGAAGGAAACCGATCGATGAAACGCAACCGTTGGGAGATGAGAGTTTAGTTGAGTGGGCTCGTCCACTACTCATCCACGCCTTTATGACGCGCGAGTTTGGCGAACTAGTAGATCCGAGACTAGAAAACAACTACGTAGAGAGTGAAATGTTCGGAATGATAGAAGCAGCTGCAGCATGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGTCTCAGGTGGTAAGAGCTTTAGACAACGGAGACGACATATCTGATTTATCAAACGGGGTGAAATACGGTGAGAGCACTGTCTATGATTCTGGCCAGTATGACAAAGACATCATGCTGTTCAGGAGAATGGGCAATGCAAGCTACGGTGATTCTGATTTTGATAAATACAGCGGAGAAGTAGTAAATTCAAAAGAGAATCCGAGATTACAGCATTCATGGATGCATAGTAGTTCGAGTACGGAGTCAGAATCAAGAGCTTTCAATAAGAATGAAGCCGGTAATGAATGA 1959 0.4584 MAEIQKKNKKKRPSSPFPILKDPNKQLNRSNHGKESAPSPESDPPTSSPSDSTLPPPRPKSPLKPEVLPPSEPPSLPPPSPTPTPSPSPSPPPPSSPPPPKSSPPPPSESPPPPSPPAPQLSPPPVHNSNSSTSPPRLSHKPPPPSPPERPSSSSSSSSSSPPRNDSPRQPMLAKSRDSQSHVSSPAEIVGYTLTGVLVVALVVLAVFFTFKKKKTKGDTYGGAFMPPPGTSFQVKSGADGLYYVKQPNGNGNAGVNGKKHISRGSVESVQPLSAQVVFSYDTVKEITNAFSSQNVIGEGGFGCVYKGWLPDGKEVAVKQLKVGSGQGDREFRAEVEIISRVHHRHLVSLVGYCIAEQQRVLIYEFVPNGNLHHHLHGSGMPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSPNILLDDAFEAQVADFGLARLTDASNTHVSTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELVTGRKPIDETQPLGDESLVEWARPLLIHAFMTREFGELVDPRLENNYVESEMFGMIEAAAACVRHSAPKRPRMSQVVRALDNGDDISDLSNGVKYGESTVYDSGQYDKDIMLFRRMGNASYGDSDFDKYSGEVVNSKENPRLQHSWMHSSSSTESESRAFNKNEAGNE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2890 652 CDD STKc_IRAK 297 566 - -
Psa4g2890 652 Gene3D Transferase(Phosphotransferase) domain 1 367 578 - -
Psa4g2890 652 SMART serkin_6 291 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2890 652 Pfam Protein tyrosine and serine/threonine kinase 294 563 IPR001245 GO:0004672|GO:0006468
Psa4g2890 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Psa4g2890 652 MobiDBLite consensus disorder prediction 152 183 - -
Psa4g2890 652 SUPERFAMILY Protein kinase-like (PK-like) 269 564 IPR011009 -
Psa4g2890 652 MobiDBLite consensus disorder prediction 42 124 - -
Psa4g2890 652 MobiDBLite consensus disorder prediction 1 183 - -
Psa4g2890 652 ProSiteProfiles Protein kinase domain profile. 291 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2890 652 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Psa4g2890 652 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 20 633 - -
Psa4g2890 652 MobiDBLite consensus disorder prediction 621 652 - -
Psa4g2890 652 MobiDBLite consensus disorder prediction 24 41 - -
Psa4g2890 652 PRINTS Proline rich extensin signature 43 55 - -
Psa4g2890 652 PRINTS Proline rich extensin signature 57 73 - -
Psa4g2890 652 PRINTS Proline rich extensin signature 78 90 - -
Psa4g2890 652 PRINTS Proline rich extensin signature 93 114 - -
Psa4g2890 652 MobiDBLite consensus disorder prediction 137 151 - -
Psa4g2890 652 Gene3D Phosphorylase Kinase; domain 1 255 366 - -
Psa4g2890 652 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 20 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2890 Psa-Chr4 231568705 231571384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2890 189 648 Trihelix Transcription Factor Family AT1G70460 58.664 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Psa4g2890 PK_Tyr_Ser-Thr 4.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2890 - - lang:109330554 635.18