Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2889 ATGGCCAGAACTAGAACCTATAACAACGTAGTTCTTCTGTACTCTAACATAATGATCTTCTTCATTCCTTTTGTCATCTCCCTCAGAAGCCTCACTCCAGACAAATCCATCCACTACAACGACTACCTAGTTTCCGAAACCGGAAAATTCGAAGCCGGGTTCACCAACATAGAGAATTCACAGAACATATACTTTTGCGTATGGTACAAGAATCTAAACCCAAGAACAATTGTTTGGGTAGCCAATAGAGATACACCACTGCAAAACTCAACAGGAATATTCAAACTCACTGATACAGGAAATCCAGTCATAGTTGATGGCTCGGAGAACACAATTTGGTTCTCTAATGCATCAACAATTGTAGAGAATCCGTTTCTATTGCTCTTGGACACCGGAAACATCGTGGTACGAAACGGAAGTTTAAATGATGTTTGGTGGCAAAGCTTTGATTATCCTGGTGACACTTTACTACCTGGGATGATACTTCGAACTAATCGAATCAATGGAGCGCATAATGCTTTGACATCATGGAAAAACTCAGGAGATCCTGCAAGAGGTGAGTTTTCGTATTATATAGATTCTAATGGTTTTCCTCAACTGTTTATTTCAAAGGGATCAGTGTTAGTTTATAGACTAGGGTCATGGAATGGATTTTTCTTCAGTGGGGTTCCTTGGGAAACACTCTATAGTTATTTCAAATTTTCCTTTGAGTTAACTGAGAAACAAGTTCAATTTAAATATGAACCGTTGAACGACACGATTGTTTCAAGATACCTTATCACTCCGACCGGCTTCGTGCAACGTTACATTTGGTTATATCAGACAGAAACTTGGCAACTTTTCCTTGCTGGCCCTGGGGACCAGTGTGATAATTACAACATCTGTGGTGTAAATTCCGATTGTAACACGGGGAACACGGAGATATGCAAATGTCTCATTGGCTTCACACCCAAATCGTCGAATGATACCGATGGGTGCGTTAGGAAGGTGAAGCTGGATTGTGACGATAGAGACAGATTCGTTACGTATACAAAGATGAAGTTGCCGGACACGTCTTCGTCATGGTTTGATGAGAAAATGAGTCTTGTGGAATGTGAGAAACAATGCCGGAAAAACTGTAGTTGCATAGCTTATGCAAGTTTAGATATTAAAAATGGTGGAAGTGGATGCATCACTTGGTTCAATAACATCATTGACATGAGGACAGGAAGCTCTTCTGGGCAAGAGATTTACATAAGAGTGGCTGCTTCAGAATTAGGTAGTTCAACGAATAACAGAAAGAAGAAAATGATAGCAGGTATTTTAGTAGGAATCGGAGTCCTCTTCTTGAGTATTACGACGGTTGGATATGTCATCTTTCTAAAGAGGAAAAAACTTCAGAACTCAGGTAGGAGCACAACAATAAACCATGAAGATAACATGAATCATGAGAAGGAAAGTATTGACATATCAACTTTTGATTTTTCTACCATAGCTAATGCCACTGACAACTTCTCCTCCATTAACAAACTTGGAGAAGGTGGATATGGACCTGTTTACAAGGGTGTACTAGCAAATGGTAGAGAGATTGCCGCCAAGCGGCTTTCGATTAAATCTGTACAAGGACCACAGGAATTTCAAAATGAAGTTCTATTGATTGCAAATCTTCAGCATAGGAATCTTGTGAAACTCATTGGTTGCTGCATTCATAATGATGAAAGAATATTGATTTATGAATACATGCCTAATAGAAGTTTGGACAACTTTATTTTTGATCAAACCAGAAGTAAAGTATTGGATTGGAACACACGTTTCCATATTATAAGAGGAATCGCCCGAGGACTTCTGTATCTTCACCAAGATTCTAGAGTAAGGATCATCCATAGAGATCTAAAAACCAGTAATATTCTTCTTGATAATGATATGAGCCCAAAAATTTCGGACTTTGGACTCGCTAGAGCTTTTGGCGGAGATCATGATGAGGCCAATACAGTTAGAGTAGTTGGAACTCATGGTTACATGCCTCCAGAATATGCTGTATATGGATCTTTTTCAGTGAAGTCTGATGTCTTCAGTTTCGGTGTTATTGTTCTAGAAATCATCAGTGGGAGGAAGAGCCGAGAATTTTTCAACCCAGAACATAATCTTAACCTTATTGGACATGCTTGGAGACTTTGGAGTGAGGATAAACAATTGGAACTGATAGATGAGACTCTTAAAGGTTCAATTACAATGGATGAGGCATTAAAATGTATTCACATTGGGTTGTTATGTGTGCAAGATAGAGCAGATGATAGGCCTGAAATGTCATCTGTTGTTCTAATGATGAATGGGGAGAGAGCATTACCTAATCCAAGGCAGCCTGGGTTTTATCCTCATGAAGTTATCTCTTACTCAAGCAAACAAGAATTGTCATCCACAAATGAAATTTCTATTTCACTGTTACACCCAAGATAA 2436 0.39 MARTRTYNNVVLLYSNIMIFFIPFVISLRSLTPDKSIHYNDYLVSETGKFEAGFTNIENSQNIYFCVWYKNLNPRTIVWVANRDTPLQNSTGIFKLTDTGNPVIVDGSENTIWFSNASTIVENPFLLLLDTGNIVVRNGSLNDVWWQSFDYPGDTLLPGMILRTNRINGAHNALTSWKNSGDPARGEFSYYIDSNGFPQLFISKGSVLVYRLGSWNGFFFSGVPWETLYSYFKFSFELTEKQVQFKYEPLNDTIVSRYLITPTGFVQRYIWLYQTETWQLFLAGPGDQCDNYNICGVNSDCNTGNTEICKCLIGFTPKSSNDTDGCVRKVKLDCDDRDRFVTYTKMKLPDTSSSWFDEKMSLVECEKQCRKNCSCIAYASLDIKNGGSGCITWFNNIIDMRTGSSSGQEIYIRVAASELGSSTNNRKKKMIAGILVGIGVLFLSITTVGYVIFLKRKKLQNSGRSTTINHEDNMNHEKESIDISTFDFSTIANATDNFSSINKLGEGGYGPVYKGVLANGREIAAKRLSIKSVQGPQEFQNEVLLIANLQHRNLVKLIGCCIHNDERILIYEYMPNRSLDNFIFDQTRSKVLDWNTRFHIIRGIARGLLYLHQDSRVRIIHRDLKTSNILLDNDMSPKISDFGLARAFGGDHDEANTVRVVGTHGYMPPEYAVYGSFSVKSDVFSFGVIVLEIISGRKSREFFNPEHNLNLIGHAWRLWSEDKQLELIDETLKGSITMDEALKCIHIGLLCVQDRADDRPEMSSVVLMMNGERALPNPRQPGFYPHEVISYSSKQELSSTNEISISLLHPR* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2889 811 ProSiteProfiles PAN/Apple domain profile. 334 415 IPR003609 -
Psa4g2889 811 Pfam PAN-like domain 334 400 IPR003609 -
Psa4g2889 811 ProSiteProfiles Protein kinase domain profile. 498 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2889 811 CDD STKc_IRAK 504 771 - -
Psa4g2889 811 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 811 - -
Psa4g2889 811 CDD B_lectin 40 152 IPR001480 -
Psa4g2889 811 SMART serkin_6 498 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2889 811 Gene3D Transferase(Phosphotransferase) domain 1 574 777 - -
Psa4g2889 811 Pfam D-mannose binding lectin 76 178 IPR001480 -
Psa4g2889 811 SMART blect_4 34 152 IPR001480 -
Psa4g2889 811 SUPERFAMILY Protein kinase-like (PK-like) 481 794 IPR011009 -
Psa4g2889 811 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Psa4g2889 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Psa4g2889 811 CDD PAN_AP_plant 330 415 - -
Psa4g2889 811 Pfam Protein kinase domain 499 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2889 811 PIRSF SRK 2 811 IPR024171 GO:0004674
Psa4g2889 811 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Psa4g2889 811 Gene3D Hepatocyte Growth Factor 331 411 - -
Psa4g2889 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Psa4g2889 811 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 22 811 - -
Psa4g2889 811 Gene3D - 27 149 IPR036426 -
Psa4g2889 811 SMART ntp_6 335 414 IPR003609 -
Psa4g2889 811 Gene3D Phosphorylase Kinase; domain 1 458 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2889 Psa-Chr4 231556518 231561413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2889 415 811 Receptor kinase-like Gene Family AT4G23220 47.596 1.60e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa4g2889 Pkinase 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2889 - - gmx:106794307 973.385