Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2882 TTGTCTTCTTCTTCAATAAAATCTACCAGATTCTTGGTGAAGTCTCAGTCTACTACTTCACCTGCTTCTTCTGATACTGTGAAAGTGATATCTGTTCCTTCTGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGGGTTGATGTTTTGAAATTTGACTCCAATGTTGCTGTTCCTGATGTTAAGGAAGATCAGGTTCTTGTTAAAGTTTTTGCAGCTGCTCTTAACCCCGTTGATGGTAAGAGAAGGCAAGGAAAGTTTAAGGCCACTGATTCTCCTCTTCCGACTGTTCCTGGTTATGATGTAGCTGGGGTTGTAGTGAAAGTTGGTAGTGAAGTAAAGGAATTCAAAGTTGGAGATGAAGTGTATGGTGATGTAAATGAGAAAGCACTAGAAGGGCCTAAACAGTTCGGTTCTCTAGCTGAGTACACAGCTGTTGAGGAGAAATTGCTGGCACTAAAACCTAAGAATTTGGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCAATTGAGACCGCTCATGAAGGTTTGGAGAGGACTGGATTTTCTTCCGGTAAATCTATTCTTGTTCTCAATGGTTCTGGTGGAGTTGGAAGTCTTGTAATTCAGCTAGCTAAACAAGTATTTGGAGCTTCAAGAGTTGCTGCCACTGCAAGCACTAGAAATTTGGAGCTGTTGAAAAGCCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGAGAGGGCAGTGAAGGCTATAAAAGAAGGTGGAAGTGTAGTAGCACTAACAGGTGCTGTTACACCACCTGGATTCAGATTTGTGGTAACTTCCAATGGAGCTGTTTTGAAGAAACTAAACCCTTATTTAGAGAGTGGAAAAGTGAAGCCAATTGTAGATCCAAAAGGTCCATTCACCTTTGATCAGGTTGCAGAAGCTTTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCTATTCCATGA 1035 0.4106 LSSSSIKSTRFLVKSQSTTSPASSDTVKVISVPSEMKAWVYGEYGGVDVLKFDSNVAVPDVKEDQVLVKVFAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKEFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPKNLDFAQAASLPLAIETAHEGLERTGFSSGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATASTRNLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCERAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIVDPKGPFTFDQVAEAFSYIETNKATGKVVIFPIP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2882 344 CDD MDR_like_2 36 340 - -
Psa4g2882 344 Gene3D - 43 340 - -
Psa4g2882 344 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 13 344 IPR044626 GO:0016628
Psa4g2882 344 Gene3D - 177 291 - -
Psa4g2882 344 Pfam Zinc-binding dehydrogenase 229 340 - -
Psa4g2882 344 SMART PKS_ER_names_mod 45 340 IPR020843 GO:0016491
Psa4g2882 344 Pfam Alcohol dehydrogenase GroES-like domain 64 126 IPR013154 -
Psa4g2882 344 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 185 206 IPR002364 GO:0008270|GO:0016491
Psa4g2882 344 SUPERFAMILY GroES-like 33 190 IPR011032 -
Psa4g2882 344 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 281 IPR036291 -
Psa4g2882 344 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 13 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2882 Psa-Chr4 230349654 230353384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2882 60 232 Monolignol Biosynthesis Gene Families AT4G39330 25.126 3.86e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2882 K18980 - gmx:100810816 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2882 4 230349654 230353384 Psa4g2882 4 230349654 230353384 ECH