Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2875 ATGAGTGAGAGAGAAGAGTTTGAGGTAGATGGAAAAAAGGGTCCTTTGGATTGGAGGTTTGTGAGTGGCAACCTTGCAAATTCATCTATGGGTTTGGTTTCCTTGGAAAATTCTATGATGGGTTGTTCTCCTTCATGCTCTAATTCAATGGTGGATTCATATGGTTCTCACTTTTTGGACCTTCTTCCCAATTCTGAAAGCTTTGGTTTTTGTGATGTTAATGGCCACAGCAATGGAAATGGAAAAGATGGGTTAAGTTTTGCAAGAGTTGGTTGTGATGATAGAACACTAGGATTTGGATGGAATGTTGCTAGTTCTATGATGAAGAGGGATGGTGTTTTAGCAAATGGACCTGAGATGTTTCCTCAAAGTTTGTCTCAGTTTCCAACTGATTCTGGATTTATTGATGCTGCAAGAATGTCGTGCTTTAGTGCCGGGAGTTTCGGAGATATGGTTAACTCGTGTAGGATTCCTCAATCTCGGCCCGTTGAGTATCCTAGATGTGATGGAAGTCCACTAGAAAATGATGGAAGAAGTGATTGTCATGTAATGTCTCTAGATGAAGGGAAGCAAGCACTTGGAGGGTCTTGTAATGAAGCTGATAGAGCTGAATCAAGCGGTGAGGGCGATGATGGTGTTGCCGTTGCCGTTGGTAGCCATGATGGTTCCCAAATGTTAGATTGTAGAAGTGGAGAACCTTCTATTGAAGGTCTAAACCCAAAGAAAAGAAAAAGAAGCAGGCAGGATGGTGATTGTGATAACGCCATTGGAACTCTTGAGTTACCAAGGGAAACTGCAAAGGAGAGTAGGCAGAAGGGAGAGCAGCAACCAAATTCAAAAGCCAAGGTTTATGGGAAAAATGCCAAACAGGGGTCTCAAGCTTCTGATTCGCCTAACGAGGGATACGTACATGTTAGGGCTCGCCGTGGTCAAGCAACAAATAGTCATAGTCTTGCCGAGAGAGTGAGGAGAGAAAAGATCAGTGAAAGGATGAAGTTTCTTCAAGATCTTGTACCTGGATGTAGCAAGGTCACTGGCAAGGCAATGATGCTAGATGAAATCATAAACTATGTACAGTCTCTTCAACAACAAGTTGAGTTTTTATCAATGAAACTCGCAACAGTGAATCCACATGTGGATTTTAATATGGAACGTCTGCTTCCTAAAGACAGTCTTCAACATCGACCTGTTCTGTCATCTACACTGGGGTTTCTCACAGACATGCCAATGACTTTTCCTCCATTATTACATCCTCCATTATTACATCCATCTCAACCTGGACTGATTCGTTCTTCTCTACCTAACATGGCTAATTCATCGGATATACTAGGGCGGACCGTGGAACCACAATTCACACCCTTGACTGGAGAATATAAAGAGCCAGATCTCGCTAATCCATTGCAAGAAGCCAAGCACTGA 1419 0.4271 MSEREEFEVDGKKGPLDWRFVSGNLANSSMGLVSLENSMMGCSPSCSNSMVDSYGSHFLDLLPNSESFGFCDVNGHSNGNGKDGLSFARVGCDDRTLGFGWNVASSMMKRDGVLANGPEMFPQSLSQFPTDSGFIDAARMSCFSAGSFGDMVNSCRIPQSRPVEYPRCDGSPLENDGRSDCHVMSLDEGKQALGGSCNEADRAESSGEGDDGVAVAVGSHDGSQMLDCRSGEPSIEGLNPKKRKRSRQDGDCDNAIGTLELPRETAKESRQKGEQQPNSKAKVYGKNAKQGSQASDSPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAMMLDEIINYVQSLQQQVEFLSMKLATVNPHVDFNMERLLPKDSLQHRPVLSSTLGFLTDMPMTFPPLLHPPLLHPSQPGLIRSSLPNMANSSDILGRTVEPQFTPLTGEYKEPDLANPLQEAKH* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2875 472 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 165 466 IPR024097 GO:0006355
Psa4g2875 472 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 160 IPR024097 GO:0006355
Psa4g2875 472 MobiDBLite consensus disorder prediction 221 300 - -
Psa4g2875 472 SMART finulus 317 367 IPR011598 GO:0046983
Psa4g2875 472 MobiDBLite consensus disorder prediction 276 299 - -
Psa4g2875 472 CDD bHLH_AtBPE_like 301 386 - -
Psa4g2875 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 361 IPR011598 GO:0046983
Psa4g2875 472 MobiDBLite consensus disorder prediction 236 251 - -
Psa4g2875 472 PANTHER BHLH TRANSCRIPTION FACTOR 165 466 - -
Psa4g2875 472 PANTHER BHLH TRANSCRIPTION FACTOR 31 160 - -
Psa4g2875 472 Pfam Helix-loop-helix DNA-binding domain 314 362 IPR011598 GO:0046983
Psa4g2875 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 380 IPR036638 GO:0046983
Psa4g2875 472 Gene3D - 308 380 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2875 Psa-Chr4 229366706 229368995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2875 1 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 40.286 6.84e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g2875 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2875 - - mtr:MTR_8g065740 670.618