Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2865 TTGCGTCTATTATTGAGGATGTTCTTCAACAACATGGCACTCGTCTCAAAGATCTTGATTTGGAATCTAGAAAATCAGAAGAAGCTGCATTGAGAAGATATGAAGTCGCGGGGTGGTTGAGGAAAATGGTTGGAATTGTTGCAGCTAAGGATTTACCGGCGGAGCCTTCTGAGGAAGAGTTTAGGCTTGGTTTGAGGAGTGGAATCATTCTTTGTAATGTTATTAACAAGGTTCAACCTGGTGTTGTATGTAAGGTTGTGGAGAGTCCGGAAATTGGAATTCCTATCTTTGAAGCTTCTGATCTAGAACAAGGGGAAAAATCATCGAGGATTGGGAATGGTGTATTGGCCCTTAAATCCTATAGTGAATGGAAACAAACTGGGGCTAATGGTGTGTGGAAATTTGGTGGAACATCAAATGCTTGCTGTTTCAATAAAAGCAAAATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTTGGTGGTCCAACTATGGCAGTCATTGCACTTAAATGTCCATCCATTGAAGTGGCTGTTGTCGACATATTTGTATCCCGCATCACAGCTCGGAACAGCGACCAGCTTCAAATCTATGAACCCGGTCTTGACGATGTTGTAAAGCAATGTCGTGGCAGGAATCTCTTCTTCAGAACTGATGTTGAAAAGCATGTCTTTGAGGCTGACATAGTGTTTGTCTCTGTTAACACCCCGACTAAAACTCAGGGTCTCGTTGCCGGCAAAGCAGCAGATTTGACATATTGGGAGAGCGCGGCTCGCATGATTGCTGATGTCTCAAAGTCTGACAAAATTGTTGTGGAGAAATCAACTGTTCCTATTTTTACCAGTGAAGGAGACAGTGTGGACAAGGTATGCATCTTTCCTAAGTTGGAAGAAATCCACCTAACCAAACTCAATAAGTTGACAGACATATGGCAAGTGGAAGTTGGTGCCGATTCCTTTTCTAGTCTCATTTCTGTGCAAATTGAAGGGTGTAAACAACTTAACAAGGTTTTTCCAAGTCACATGACAGGATGGTTTGGGAGTTTAGACAGCTTGAAGGTTATTGATTGCATGTCGGTGGAAGTGATTTTTGAAATCAAAGATTTTCAACCAGATGTATCTATGAAAGTCACAAACCTGCAGCTTATTTTGGTAGACCAACTCCCAAATCTAAAGCAAGTATGGGATAGAGATCCAGAAGGAATTCTTTGCTTCAAAAATCTGCGGGTTATAGAGGCTACACGCTGTAATAAACTGAGCTATCTCTTACCAGCTTCTGTGGCCAAAGATCTAAAAAGGCTTGCAGGCATTTTAGTAAATCTTTGTGATGGCATGGAGGAAATTGTTACTTGGCATGATGGACCACAAGCACGATTAATGTTTCCTGAAGTAACCTTCATGAAACTGTACGGCCTGCCAAATGTGAAGCGTTTCTATAATGGGGGACATATAGAATGTCCAAAACTGAAGCAGTTGGCTGTGGACTTTTGTGATAAGCTGGGCGTGTTCACAACAGAAACCACAAATGAAGAAAGACAAGCAGTTTTCTTAGCCGAAAAGAGATGTAGTCATACTTGGTTCAAGAAGGAAAATGTTAATGAGCTACGCAGTCTTGATGAAAAGCTAAGTCTTCAAAGAAAGAGGCTGGAACATGCGGTAGCTGAAACTGAGGATAATCTGGGAATAACTGAAAGTGATGTTACAGCTTGGCTTCAGAAAGTGGATAAAACTAGAACTGAAACAGAGGAGTTTCAAAATGATGAAGGCCACACGAAGACAAGGTTTTCCAGTGGTTTATTTCATTACTTCAGGAACAGGCATAGACTAGGGAGAAAAGCCGAGAAGAAGCAATTTTACGATGCCAAGCTAGGCCAGCTTCTAGACGAGTTTTCTCAGATTCTCATTGTTAACGCTGACAATGTTGGATCAAAGCAGCTTCAGAATAGTCGAAGCGGTCTACGTGGGGATTCTGTAGTTCTTATGGGGAAGAATACTATGATGAAGAGATCTGTTAGGATTCATGCTGAGAAGACTGGGAACAATGCTTTTATCAACCTGATTCCTCTCCTTGTTGGAAACGTTGGTTTGATTTTCACCAAAGGAGATTTGAAAGAGGTTAGCGATGAAGTTGCCAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCCATTGATGTTGTTATTCCACCAGGCAACACAGGGCTCGACCCATCCCAAACCTCTTTCTTCCAGGTGCTCAACATCCCACAAAGATTAACAAGGGTACTGTTGAAATCATTACACCTGTTGAACTCGTCAAGAAGGGAGACAAGGTTAGATATTCCGAAGCTACAAAATAATTACCAAGCAGTAAAATTTCAAAGAATACCCGAATTGGCATTAAGACAAAACAGAGGGAGAAAGCTTGAGTTCAGATTACCGTTCCGAAATTTAGCATCAAAAAGGACCGCTCAAATTTCTGAGCACCGAAAGGACTTGGCTGGGATACTTCTTGGATCCACCATAGCAATCCGAAAACCCTAA 2531 0.4192 ASIIEDVLQQHGTRLKDLDLESRKSEEAALRRYEVAGWLRKMVGIVAAKDLPAEPSEEEFRLGLRSGIILCNVINKVQPGVVCKVVESPEIGIPIFEASDLEQGEKSSRIGNGVLALKSYSEWKQTGANGVWKFGGTSNACCFNKSKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIFVSRITARNSDQLQIYEPGLDDVVKQCRGRNLFFRTDVEKHVFEADIVFVSVNTPTKTQGLVAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPIFTSEGDSVDKVCIFPKLEEIHLTKLNKLTDIWQVEVGADSFSSLISVQIEGCKQLNKVFPSHMTGWFGSLDSLKVIDCMSVEVIFEIKDFQPDVSMKVTNLQLILVDQLPNLKQVWDRDPEGILCFKNLRVIEATRCNKLSYLLPASVAKDLKRLAGILVNLCDGMEEIVTWHDGPQARLMFPEVTFMKLYGLPNVKRFYNGGHIECPKLKQLAVDFCDKLGVFTTETTNEERQAVFLAEKRCSHTWFKKENVNELRSLDEKLSLQRKRLEHAVAETEDNLGITESDVTAWLQKVDKTRTETEEFQNDEGHTKTRFSSGLFHYFRNRHRLGRKAEKKQFYDAKLGQLLDEFSQILIVNADNVGSKQLQNSRSGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAFINLIPLLVGNVGLIFTKGDLKEVSDEVAKYKVGAPARVGLVAPIDVVIPPGNTGLDPSQTSFFQVLNIPQRLTRVLLKSLHLLNSSRRETRLDIPKLQNNYQAVKFQRIPELALRQNRGRKLEFRLPFRNLASKRTAQISEHRKDLAGILLGSTIAIRKP* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2865 842 Coils Coil 534 558 - -
Psa4g2865 842 Gene3D Ribonuclease Inhibitor 287 580 IPR032675 -
Psa4g2865 842 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 610 756 - -
Psa4g2865 842 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 610 756 - -
Psa4g2865 842 SUPERFAMILY Ribosomal protein L10-like 612 739 IPR043141 -
Psa4g2865 842 SUPERFAMILY RNI-like 291 500 - -
Psa4g2865 842 Gene3D - 16 91 IPR036872 -
Psa4g2865 842 Gene3D - 608 752 IPR043141 -
Psa4g2865 842 Gene3D - 145 286 - -
Psa4g2865 842 Pfam Ribosomal protein L10 612 712 IPR001790 -
Psa4g2865 842 SUPERFAMILY Calponin-homology domain, CH-domain 32 133 IPR036872 -
Psa4g2865 842 CDD Ribosomal_P0_L10e 613 756 - -
Psa4g2865 842 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 150 282 IPR036291 -
Psa4g2865 842 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 150 282 IPR001732 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2865 Psa-Chr4 228834307 228837984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2865 611 756 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.877 3.86e-77 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2865 K02941 - mtr:MTR_8g028500 397.897