Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2857 ATGGGAAGAGGTAGGGTTCAGTTGAAGAGGATAGAAAACAAGATCAATCGTCAGGTTACTTTCTCTAAAAGGAGAGCTGGACTTCTCAAGAAAGCTCATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAACTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATTCTGGAGCGCTATGAAAGGTATTCATATGCAGAGAGACAACTAGTTGCAAATGATTCTGAGTCACAGGGAAATTGGACCATTGAGTATACAAGACTGAAGGCAAAGATTGATCTTTTGCAAAGAAACTATAGGCATTACATGGGAGAAGATTTGGGTACAATGAGCCTCAAAGAGCTTCAGAGTTTGGAACAGCAGTTAGATACTGCTCTCAAACTCATTCGTACACGCAGAAACCAACTCATGTACGAGTCCATTTCAGAGCTTCAGAAAAAGGAGAAAGTGATTCAGGAGCAGAATAACATGCTTGCGAAAAAGATCAAGGAGAAAGAAAAGATTGCAGCTGAGCAGCAGGTACAATGGGAGCACCCAAACCACCATGGAGTCAATCCAAATTACTTACTACACCAGCAACTTCCAAGCTTGAACATGGGTGGTAATTACCGTGAGGAAGCACCAGAAATGGGGAGGAATGAGCTTGACTTGACCCTTGAACCACTGTATACCTGCCACCTTGGATGCTTTTGA 723 0.4232 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGTMSLKELQSLEQQLDTALKLIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKIAAEQQVQWEHPNHHGVNPNYLLHQQLPSLNMGGNYREEAPEMGRNELDLTLEPLYTCHLGCF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2857 240 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 224 - -
Psa4g2857 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Psa4g2857 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g2857 240 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Psa4g2857 240 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Psa4g2857 240 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Psa4g2857 240 Coils Coil 151 181 - -
Psa4g2857 240 Coils Coil 95 115 - -
Psa4g2857 240 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g2857 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g2857 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g2857 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g2857 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g2857 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g2857 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g2857 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa4g2857 240 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2857 Psa-Chr4 228213267 228217868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2857 1 240 MADS-box Gene Family AT1G26310 66.142 5.95e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa4g2857 K-box 6.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2857 K09264 - gmx:100810129 419.083