Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2851 ATGAGCTTCCAGGACATTGAATCCGGCCGCCCGTTCAGACGCGGACCGATCAACGGGAAGCAAGACCCAACGCAAGCGGTGGCTGCCGGTATTTTTCAGATCAATACAGCCGTATCCACCTTTCAGAGACTTGTTAATACCCTTGGAACCCCCAAAGATACCCCTGAACTCCGTGAAAAACTTCACAAGACAAGACAACATATTGGGCAGTTGGTGAAGGATACATCAGCTAAGCTTAAACAGGCTAGTGAAATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAAATAGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTTCAGCGGAGAGGGAAACAGCTTACACTCCTTTCGTTCCACAAGCAATGCTTCCTTCTAGCTATACAGCCAGTGAAATGGATGTTGGCTCTGATAAGACACCAGAACAGCGTGCCCTTCTTGTCGAATCCAGGAGGCAGGAGGTTTTATTCTTAGATAATGAAATTGCCTTCAATGAGGCAATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAACAACAAATCGGTGAAGTTAATGAAATTTTCAAAGATCTCGCTGTGCTTGTCCATGAACAAGGAACCATGATTGATGATATTGGTTCCAACATTGAGAATTCGCATGCTGCAACAGCACAAGCAAAAACTCAACTTGCAAAAGCTTCAAAAACACAAAGATCAAACTCATCTTTGGCATGCCTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATAGTGATCATAGTTCTCGCTGCTTAG 816 0.4363 MSFQDIESGRPFRRGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRQHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAMLPSSYTASEMDVGSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKTQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2851 271 SUPERFAMILY t-snare proteins 21 233 IPR010989 GO:0016020|GO:0016192
Psa4g2851 271 MobiDBLite consensus disorder prediction 1 20 - -
Psa4g2851 271 Pfam Syntaxin-like protein 28 127 IPR006011 GO:0016020
Psa4g2851 271 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 178 240 IPR000727 -
Psa4g2851 271 SMART SynN_4 13 125 IPR006011 GO:0016020
Psa4g2851 271 CDD SynN 21 146 IPR006011 GO:0016020
Psa4g2851 271 Pfam SNARE domain 214 266 IPR000727 -
Psa4g2851 271 Gene3D - 18 131 - -
Psa4g2851 271 ProSitePatterns Syntaxin / epimorphin family signature. 184 223 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa4g2851 271 SMART tSNARE_6 173 240 IPR000727 -
Psa4g2851 271 CDD SNARE_Qa 198 239 - -
Psa4g2851 271 Gene3D - 172 271 - -
Psa4g2851 271 PANTHER SYNTAXIN OF PLANTS PROTEIN 11 270 - -
Psa4g2851 271 PANTHER SYNTAXIN 11 270 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2851 Psa-Chr4 227798615 227803502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2851 1 259 SNARE and Associated Proteins AT5G46860 78.077 5.72e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2851 - K08488 gmx:547656 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2851 4 227798615 227803502 Psa4g2851 4 227798615 227803502 ECH