Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2836 ATGGCCCGTCCCGATTATCCAACAACATGGATTCCTAACCTAAACAGCAAGGACTGTTCACAAGGCTTTTGTAGCATGTACTGTCCACAATGGTGCTACATAATTTACCCTCCTCCACCACCACCAACGTTTCAATACCCTGATGATGATTCAAAACCGTATTTTTCACCTCTTGTTATTGCTATCATGGGAATTTTAGCCACGGCTTTTCTGTTACTAACTTACTATACTCTAATTTCCAAATACTGTGGCCACAGAGAAACCTCAAGAAGAAATAGCACTGACCCGGTTGAGGAATTCACGCAAAATCGACGCGAAAACTGTCAGGTTTCGACTTTTGGCTTAGATGATGTTCAAATCAAGTCCATTGCAGTCTTGAAATACAAAAAAGGCGACACTTTTTTTGCTGTCACTGATTGTTCCGTTTGTCTAAGTGAGTTTCAAGATGGTGAGAGCGTTAGGCTTTTACCAATGTGTAACCATGTGTTTCATCTTCCTTGTATCGACACATGGCTCAAATCGAACTCTTCTTGTCCTCTATGTCGCGCTAACATATTCACTTTGAATGCTTCAACACTCCATGTTTCAGTTCAAGTTCCTGCTACGGTTATTGAATTTCCTTCAAGAAATGAAACTTTTTCGGAAGATGAACAAATAGTTGTGGAAGAAACAAGGATGTATCATCATAGTAGAGTTGATTCGAAGGCGCTTTCGTTGCGCGCTTTTAGTGATCTATGTAATTTGCAAGGTGGAAGAGAAAGAATAGTTGAAGTTAGAGATGAAGTGTGTAGGTCAGTTTCCATGGATCATTCACTTCAAAATGGTTTTTCAATTGGTGATGTGTTGAATATGAATGAAGATGAAGATTTTTGTGAAGAAGGATGTTCAATGGATTCATCAAAGAGATTAAGAGGAGAAAGTAGTAAGTCAAGGTACAAAAGAAAGGTGTTGCATTGTGTTAAGAGTCCAATTGCAATGAAAAGATCATTTTCTAGTGGAACATTTTCACTTGGTAAAATAGATAGAGGAAGAAAGCATGAAATTTTCCATGTTTGA 1056 0.3835 MARPDYPTTWIPNLNSKDCSQGFCSMYCPQWCYIIYPPPPPPTFQYPDDDSKPYFSPLVIAIMGILATAFLLLTYYTLISKYCGHRETSRRNSTDPVEEFTQNRRENCQVSTFGLDDVQIKSIAVLKYKKGDTFFAVTDCSVCLSEFQDGESVRLLPMCNHVFHLPCIDTWLKSNSSCPLCRANIFTLNASTLHVSVQVPATVIEFPSRNETFSEDEQIVVEETRMYHHSRVDSKALSLRAFSDLCNLQGGRERIVEVRDEVCRSVSMDHSLQNGFSIGDVLNMNEDEDFCEEGCSMDSSKRLRGESSKSRYKRKVLHCVKSPIAMKRSFSSGTFSLGKIDRGRKHEIFHV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2836 351 SUPERFAMILY RING/U-box 139 188 - -
Psa4g2836 351 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 341 IPR044675 -
Psa4g2836 351 SMART ring_2 140 181 IPR001841 -
Psa4g2836 351 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 341 - -
Psa4g2836 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 189 IPR013083 -
Psa4g2836 351 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Psa4g2836 351 CDD RING-H2_PA-TM-RING 139 182 - -
Psa4g2836 351 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2836 Psa-Chr4 226898571 226899991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2836 1 310 C3H Transcription Factor Family AT3G03550 40.120 3.41e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2836 - - vun:114176645 378.637