Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2834 ATGCATTCTGGAGAACGTCAAGCTGCAAAAATGAGGATGGCATATTTAAGATCAATGTTGAACCAAGACATAAGTCTTTTTGATACTGAACCATCAACTGGACAAGTTATTTCTTCTATTACAACTGACATCATATTTGTTCAAGAAGCATTATCCGAGAAGGTTGGGAACTTTATGCACTACATAAGCCGATTTATAGCCGGCTTTATAATCGGTTTTTTCAAAGTTTGGCAGACTAGTTTAGTCACACTTGCGATTGTTCCTTTGATTGCTATTGCCGGAGGTCTTTATGCATACGTCTCGTTCGGTCTTATTGCGAAAGTTCGTAAATCGTATACGCGGGCTGGTCAAATTGCTCAGGAAGTGTTAGGAAATGTGAGAACTGTACAAGCATTTGGAGGAGAACAAAGAGCAGTGATATCATACAAAGTAGCTTTGAGAAATACTTATAAGAATGGTAGAAAAGCAGGTTTAGCAAAGGGTCTTGGACTAGGCTCTATGCATTGTGTTCTTTTTCTGTCATGGGCTTTTCTTGTTTGGTTCACCAGCATTGTTGTTCACAAAGGTATCGCCAATGGTGGAGTCGCTTTCACTACAATGCTCAATGTTGTTATCTCCGGCCTGTCACTCGGGCAGGCAGCACCAGACATTTCTGCATTTGTTAGAGCGAAATCAGCAGCGTATCCTATTTTTGAGATGATAAGTCGAGACAAAGTTAGCTCAAAAACTGGTCGAAAATTAAGAAAAATAGACGGTCACATACAATTTATTAACGTATGTTTCAGCTATCCGTCACGTCCTGATGTTGTTATTTTCAACAATCTTTGTCATGAGATTCCTTCTGGTAAAATTTTGGCACTTGTAGGAGGAAGTGGTTCGGGAAAAAGCACAATTATTTCGTTAATTGAGCGTTTCTATGAACCAATTTCTGGTCAAATTCTATTAGATAGAAATGATATAAGAGAACTTGATCTAAAATGGCTTAGACATCAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCTACAACCATAAGGGAGAACATATTGTATGGTAAAAACGACGCCACACCTGAAGAACTAAACCGCGCTTTGGAACTTTCTGATGCTCACTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGGATACAGTTATCAGGAGGACAAAAGCAAAGGATTGCGATATCTCGCGCTATAGTTAAGAATCCATCTATCTTATTATTAGATGAAGCAACTAGTGCTTTGGATGCGGAGTCTGAAAAAAGTGTACAAGAGGCTCTTGATCGTGTCATGATCGGTAGAACAACTGTGATAGTTGCACATAGACTTTCTACCATTAGGAATGCAGATATGATAGCTGTTGTTAAAGAAGGGAGCATTGTGGAAACTGGAAATCATGAAGAGCTCATTTCCAAGTCAAATAGTGTTTATGTATCTCTTGTTCAAGGCAATCCTTGTTCGGATCCTTCCTTAGGACAATCATCAAGCATAAAGAACGCAGGAGAAACATCGCATACATCGATTATTGGTGGTAGTTTTCGTTCAGATAAGGACTCTACTGGCCATGCATGTGATGATGAAGCAGAAAGAATTGAAAAATCAAAGCCAGTTTCATTGATAAGATTATATTCAATGATTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTGGCTGCTTTTGTTACTGGTGCTCTTATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATACTACATGGATTGGGATAGCACACAACATGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCGATTGTAGCTATCACTGCTTATTCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTTACGCTACGTGTTAGAGAAATTATGCTTTCTGCTATTTTGAAGAATGAAATTGGTTGGTTTGATGATACAAGAAACACAAGCACTGTGCTTTCATCGCGTTTAGAGAGCGATGCGACTTTGTTAAAAACGATAGTGGTGGATCGTTCTACAATTCTCTTGCAGAACGTTGGTCTCGTTGTTACTTCATTTATCATTGCATTCATTTTGAACTGGAGAATAACACTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTCGGTGGTAACCTAAGCAAAGCATATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTCAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATTATTGACCTTTATGTTAACGAGCTTGTCGAGCCTTCCAAACGTTCGTTCAAACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCGTATGGCGTAGCCTTGTGGTATGGATCTGTATTGATTGAAAAGGAAATTTCTAGCTTTAAATCAATCATGAAGTCATTTATGGTGTTAATAGTAACTGCACTGGCTATGGGAGAGACACTGGCACTTGCACCAGACCTTTTGAAAGGGAATCAAATGGTTTCATCAATTTTCGATATGATAGATCGAAAGTCAGGAATAGTGCATGATGTTGGAGAAGAATTGATGACAGTGGAAGGAACAATTGAGCTAAGAAAGATCAATTTTAGCTATCCTTCAAGACCAAACATTGTTATTTTTGATAATTTCAATCTAATGGTGCCTTCAGGGAAGAGTCTTGCCTTGGTTGGGCATAGTGGTTCTGGCAAAAGCTCAATAATCTCACTCATACTTAGATTTTATGATCCAACTTCTGGAAAAGTGATGATTGATGGAAAAGATATCAAGGAAATGAATTTGAAATCGCTTAGGAAGCACATTGGTCTAGTACAACAAGAACCAGCTCTATTTGCAACATCGATTTACAAGAACATTCTTTACGGAAAAGAAGAAGCATCTGAATCAGAAGTGATTGAAGCAGCTAAACTGGCCAATGCTCATAATTTCATTAGTGCACTTCCTGAAGGCTACTCAACCAAAGCAGGTGAGAGAGGAGTTCAACTATCCGGTGGCCAAAAACAAAGGGTAGCCATTGCAAGAGCTATTTTGAGAAATCCTGAAATATTACTTCTTGACGAAGCAACAAGCGCACTAGATGTAGAGTCGGAGCGCGCTGTTCAACAAGCTTTAGATAAGTTGATGCAAAACAGAACAACAGTTATTGTGGCACATAGGCTATCCACAATAAGAAATGCAGATCAAATATCAGTTTTGCAGGATGGAAAGATTATTGAACAAGGTACTCATTCAAGTCTTATAGAGAATATAGATGGAGCTTATTTCAAACTAGCCAGCCTACAACAACAAACAGCTACATAA 3375 0.3881 MHSGERQAAKMRMAYLRSMLNQDISLFDTEPSTGQVISSITTDIIFVQEALSEKVGNFMHYISRFIAGFIIGFFKVWQTSLVTLAIVPLIAIAGGLYAYVSFGLIAKVRKSYTRAGQIAQEVLGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWAFLVWFTSIVVHKGIANGGVAFTTMLNVVISGLSLGQAAPDISAFVRAKSAAYPIFEMISRDKVSSKTGRKLRKIDGHIQFINVCFSYPSRPDVVIFNNLCHEIPSGKILALVGGSGSGKSTIISLIERFYEPISGQILLDRNDIRELDLKWLRHQIGLVNQEPALFATTIRENILYGKNDATPEELNRALELSDAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVIVAHRLSTIRNADMIAVVKEGSIVETGNHEELISKSNSVYVSLVQGNPCSDPSLGQSSSIKNAGETSHTSIIGGSFRSDKDSTGHACDDEAERIEKSKPVSLIRLYSMIGPYWSYGVFGTLAAFVTGALMPLFALGISHALVSYYMDWDSTQHEVKKIAFLFCGAAIVAITAYSIEHLSFGIMGERLTLRVREIMLSAILKNEIGWFDDTRNTSTVLSSRLESDATLLKTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIDLYVNELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGVALWYGSVLIEKEISSFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIVHDVGEELMTVEGTIELRKINFSYPSRPNIVIFDNFNLMVPSGKSLALVGHSGSGKSSIISLILRFYDPTSGKVMIDGKDIKEMNLKSLRKHIGLVQQEPALFATSIYKNILYGKEEASESEVIEAAKLANAHNFISALPEGYSTKAGERGVQLSGGQKQRVAIARAILRNPEILLLDEATSALDVESERAVQQALDKLMQNRTTVIVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENIDGAYFKLASLQQQTAT* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2834 1124 SMART AAA_5 281 473 IPR003593 -
Psa4g2834 1124 SMART AAA_5 908 1100 IPR003593 -
Psa4g2834 1124 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 562 848 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g2834 1124 Pfam ABC transporter transmembrane region 2 206 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g2834 1124 Pfam ABC transporter transmembrane region 563 834 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g2834 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 489 IPR027417 -
Psa4g2834 1124 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 254 490 IPR003439 GO:0005524
Psa4g2834 1124 SUPERFAMILY ABC transporter transmembrane region 543 862 IPR036640 GO:0005524|GO:0016021
Psa4g2834 1124 Pfam ABC transporter 900 1048 IPR003439 GO:0005524
Psa4g2834 1124 Pfam ABC transporter 273 421 IPR003439 GO:0005524
Psa4g2834 1124 Gene3D - 252 510 IPR027417 -
Psa4g2834 1124 SUPERFAMILY ABC transporter transmembrane region 3 235 IPR036640 GO:0005524|GO:0016021
Psa4g2834 1124 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 230 - -
Psa4g2834 1124 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 1121 IPR039421 -
Psa4g2834 1124 ProSitePatterns ABC transporters family signature. 393 407 IPR017871 GO:0005524
Psa4g2834 1124 ProSitePatterns ABC transporters family signature. 1020 1034 IPR017871 GO:0005524
Psa4g2834 1124 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 1 1121 - -
Psa4g2834 1124 CDD ABC_6TM_Pgp_ABCB1_D2_like 551 866 - -
Psa4g2834 1124 Gene3D - 872 1124 IPR027417 -
Psa4g2834 1124 Gene3D ABC transporter type 1, transmembrane domain 2 857 IPR036640 GO:0005524|GO:0016021
Psa4g2834 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 874 1119 IPR027417 -
Psa4g2834 1124 CDD ABC_MTABC3_MDL1_MDL2 254 490 - -
Psa4g2834 1124 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g2834 1124 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 881 1117 IPR003439 GO:0005524
Psa4g2834 1124 CDD ABC_MTABC3_MDL1_MDL2 881 1119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2834 Psa-Chr4 226826393 226831384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2834 1 1124 Calmodulin-binding Proteins AT2G36910 50.475 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2834 K05658 - gmx:100819045 1790.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2834 4 226826393 226831384 Psa4g2834 4 226826393 226831384 ECH