Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2831 ATGGATTACAACCGAGACGGCAACGTCGTTCAAATCATCACCGGCGGAGGCGGAGGCGGCACTGATAGCTGGTCGAGTGACCAAGCAGATTGGGCGACGGAAGATGAGTACCGATACTGGAACGGAAACGAAGCCGGCGAAACCACTCCGTCTTCGAACTCCAATTGCGAGAGACAACAGCGTTCGGGAAGCGAGCCGCCGAATAAGAAATCGAGAAGCAGTTCGCAAGACGGAGGAAATGGCGGCGGCGGCGGATCCAATCGAGCGAAAGCAATTGGGAAGATGTTTTTCAAGACGAAGCTCTGCTGCAAGTTTCGTGTGGGGACTTGTCCTTACATAACGAACTGTAATTTCGCTCACAGTGTTGAAGAGCTCCGTCGGCCGCCGGCGAATTGGCAGGAAATTGTGGCGGCACATGAGGAAGAGAGGAACGTGCTTGAGCAGCCGAGGGAGGAGTTTCAGATTCCGACGGTTGGGTCGAGTACTTTTGTAGGGGAGAGTATGAATAATAGGTCTTATAAGGGTAGGCATTGTAAGAAGTTTTATACCGAGGAAGGTTGTCCTTATGGAGATAGTTGCACGTTTCTTCATGACGAGCAATCCAAGAATCGCGAAAGTGTTGCTATAAGTTTAGGTCCTGGTGGTTATGGAGGTGGTGGTGGAGGTAGTACTGGTAGTGGTGGTGGTGGTGGTGGCGGTGGTGGTGGTGGTGGTAGTGCTAGTGGTGTTGTTGTTGTTGCGGCTGGTGCTGCAGCGGCTGGAAATGGAACAAATTTGAAGCCTTCGAATTGGAAAACTAGGATTTGCAATAAGTGGGAAATGACTGGGTATTGCCCCTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAGTTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAAGCAGAGACGGTGTTTCTGTTGTTGCGTCCGACTCAAAACAGGGAGTATCATCAAAAAATCAGGCTGATAATGTGGTTGCATCAACTCCACCTATAGGTCATTCAGATGTTTATCATATTGGAGTCCCTTCACAGAGGCCTTCCATTGTGAGTCAGCAGCCAGGACAGAGAGCTCATCATAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGCGATTGGATCGACGACTTTGACTAG 1155 0.4952 MDYNRDGNVVQIITGGGGGGTDSWSSDQADWATEDEYRYWNGNEAGETTPSSNSNCERQQRSGSEPPNKKSRSSSQDGGNGGGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPANWQEIVAAHEEERNVLEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGSTGSGGGGGGGGGGGGSASGVVVVAAGAAAAGNGTNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGVSVVASDSKQGVSSKNQADNVVASTPPIGHSDVYHIGVPSQRPSIVSQQPGQRAHHKWKGPDKISRIYGDWIDDFD* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2831 384 SUPERFAMILY CCCH zinc finger 94 127 IPR036855 GO:0046872
Psa4g2831 384 MobiDBLite consensus disorder prediction 44 82 - -
Psa4g2831 384 SUPERFAMILY CCCH zinc finger 260 294 IPR036855 GO:0046872
Psa4g2831 384 Gene3D - 164 211 - -
Psa4g2831 384 SUPERFAMILY CCCH zinc finger 169 200 IPR036855 GO:0046872
Psa4g2831 384 Gene3D - 93 127 - -
Psa4g2831 384 Gene3D - 257 295 - -
Psa4g2831 384 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Psa4g2831 384 SMART c3hfinal6 263 290 IPR000571 GO:0046872
Psa4g2831 384 SMART c3hfinal6 172 199 IPR000571 GO:0046872
Psa4g2831 384 SMART c3hfinal6 96 122 IPR000571 GO:0046872
Psa4g2831 384 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Psa4g2831 384 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 289 IPR000571 GO:0046872
Psa4g2831 384 ProSiteProfiles Zinc finger C3H1-type profile. 96 123 IPR000571 GO:0046872
Psa4g2831 384 MobiDBLite consensus disorder prediction 35 86 - -
Psa4g2831 384 Pfam CCCH-type zinc finger 176 198 IPR041367 -
Psa4g2831 384 ProSiteProfiles Zinc finger C3H1-type profile. 263 291 IPR000571 GO:0046872
Psa4g2831 384 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 214 IPR045877 GO:0003729
Psa4g2831 384 PANTHER CCCH ZINC FINGER/TIS11-RELATED 250 381 IPR045877 GO:0003729
Psa4g2831 384 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 14 214 - -
Psa4g2831 384 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 250 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2831 Psa-Chr4 226495915 226498575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2831 265 293 C3H Transcription Factor Family AT1G68200 62.069 4.11e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g2831 zf-CCCH 1.2e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2831 4 226495915 226498575 Psa4g2831 4 226495915 226498575 ECH