Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2822 ATGGCTTCCGACGGCTTCACCGACAAGAACGCCGTGTTCAGAAAACTCAAAACCAAGTCCGAAAACAAGTCGTGTTTTGATTGTAATGCGAAGAACCCTACCTGGGCGTCGGTACCGTATGGGATCTTCCTCTGCATTGATTGCTCGGCAGTTCATCGGAGTCTCGGCGTTCACATCAGCTTCGTGAGATCTACGAACTTAGACTCATGGACTCCTGAGCAACTTAAATTGATGAGCTTTGGCGGAAATGGTAGGGCAAATGTTTTCTTTAGACAGCATGGTTGGAACGGCGGTGGTAAGGTAGAGGCGAAGTATACATCCAGAGCTGCAGAGTTGTATAAGCAGTTGCTTTCAAAAGAAGTTGCTAAAAGTATGGCTGAGGAGGCTGCCTTGTCTCCATCCCCTGCAGCTCCTTCTCAGTCTGCCCAAGAGGATAATGGACTTCCTGATGTCAGGACAACTGAAGTCCCAATTGAAAAGACTTTGGAGAAGCCAGAAAAGACTGAGAGCACTTCTTCACCTAGAGCTTCATATACTGCGGCTTCAAATAATTTGAAGAAGCCTATCGGAGCCAAAAAAATTACTAAGAGTGGGGGACTTGGAGCCCGTAAGCTCACTAGAAAGCCAAGTGAGTCTCTCTACGAGCAGAAGCCTGAAGAAGCACCTGCACCAGTATCATCATCGATCAACAACAACTTGCCTTCTGGGCCACCTCCAACATCTCGGTTTGAGTATACAGAAGATGTCCAAACATCTGAGTTAAATTCTGGAGGTCACGTGTCTGCACCAAAGTCATCTAACTTCTTTTCAGACTTTGGAATGGGTAGTAGTGGCTTTCCAAAGAAATCTGGGCCAGGCTCCTCAAAAGTGCAAGTTCAGGAAACTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAGTCTATTTCTTCATCCCAATATTTTGGAGACCAGAGCAAGGCTGATGTGGATGCTCAAGCTACTTTATCAAAGTTTTCAGGTTCATCTGCTATATCCAGTGCCGATCTTTTTGGTGACTCGAGAGACAACTCTGTCGATCTTGCTGCCAGTGACCTTATCAATCGAATATCTTTCCAGGCACAACAGGATATTTCTTCCCTTAAGAACATTGCTGGAGAAACTGGGAAAAAGCTCACCTCCTTGGCATCCTCCTTGATGACAGATCTTCAGGACCGAATCCTCTGA 1203 0.458 MASDGFTDKNAVFRKLKTKSENKSCFDCNAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKLMSFGGNGRANVFFRQHGWNGGGKVEAKYTSRAAELYKQLLSKEVAKSMAEEAALSPSPAAPSQSAQEDNGLPDVRTTEVPIEKTLEKPEKTESTSSPRASYTAASNNLKKPIGAKKITKSGGLGARKLTRKPSESLYEQKPEEAPAPVSSSINNNLPSGPPPTSRFEYTEDVQTSELNSGGHVSAPKSSNFFSDFGMGSSGFPKKSGPGSSKVQVQETDEARKKFSNAKSISSSQYFGDQSKADVDAQATLSKFSGSSAISSADLFGDSRDNSVDLAASDLINRISFQAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2822 400 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 400 - -
Psa4g2822 400 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Psa4g2822 400 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 400 - -
Psa4g2822 400 MobiDBLite consensus disorder prediction 276 316 - -
Psa4g2822 400 MobiDBLite consensus disorder prediction 223 262 - -
Psa4g2822 400 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Psa4g2822 400 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Psa4g2822 400 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Psa4g2822 400 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Psa4g2822 400 MobiDBLite consensus disorder prediction 156 170 - -
Psa4g2822 400 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Psa4g2822 400 CDD ArfGap_ArfGap2_3_like 8 123 - -
Psa4g2822 400 MobiDBLite consensus disorder prediction 127 262 - -
Psa4g2822 400 MobiDBLite consensus disorder prediction 134 148 - -
Psa4g2822 400 Pfam Putative GTPase activating protein for Arf 12 107 IPR001164 GO:0005096
Psa4g2822 400 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2822 Psa-Chr4 225524173 225529319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2822 13 90 C2H2 Transcription Factor Family AT4G21160 46.835 5.57e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2822 K12493 K11855 gmx:100785169 608.601