Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2809 ATGCCTCCGCCACCGCTGCTGGTTCCTGAAGAGGAAGGGCAGAGCAACACCTCAACGGTAGCATCTGCATCTCCACGATCTTTGGACTGTTTCTCCCAAACTGGAGCTGGATTGAAAGAACGCAATTACCTTAGATTGTCCGATTGCTCATCGGTCGAAAGTTCTGGTGTCCCAAGCTTGTCTGATGAGCAAAAGGTGAACCTGAATTTGAAAGCTACGGAGTTAAGGCTCGGCCTTCCTGGATCCCAGTCGCCTGAAAGGGATTTGGATCTTTTTTCTTTGGCCTCAACTAAGCTTGATGAGAAACCGCTGTTCCCTTTGCTTCCCACTAAAGATGGAATTTGCTCATTGTCCCAGAAGAACGTGGTTTCGGGAAACAAAAGAGGTTTCGCTGACACAATGGATGTTTTTCCTGAGGCGAAATATAATAGTAATGCGCGTGTGAACATATTGCTATCGCCTAGACCCTCTACAGCTCAACCTACTACAGTTAAAGATATATCAAACAAAGTGTTACAAGAGAGCTCTTGTGCAGCAAATGGAACTGGTGCTCCCGTCAATGGCAGCGCACCGGCTTCTAAAGCACAAGTTGTCGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCATTGGCTACCACTTCTAAGAACAACGATGAAGTGGACGGCAAACCAGGTCCAGCTGCACTCTTTGTGAAGGTTAGCATGGACGGTGCTCCTTATCTTAGGAAGGTAGATTTGAGAAACTATACAACGTATCAGGAACTGTCGTCCGACCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGCGGTTCTCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAAGGACTTCCTCCATGGTTCTGAATATGTAGTCACTTATGAAGATAAAGACGGTGACTGGATGCTTGTTGGAGATGTACCGTGGGACATGTTCACTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCAAGGGCTATGGAAAAATCCAAGAGCAGGAGCTAA 1050 0.461 MPPPPLLVPEEEGQSNTSTVASASPRSLDCFSQTGAGLKERNYLRLSDCSSVESSGVPSLSDEQKVNLNLKATELRLGLPGSQSPERDLDLFSLASTKLDEKPLFPLLPTKDGICSLSQKNVVSGNKRGFADTMDVFPEAKYNSNARVNILLSPRPSTAQPTTVKDISNKVLQESSCAANGTGAPVNGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2809 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Psa4g2809 349 PANTHER AUXIN-INDUCED PROTEIN 13 342 - -
Psa4g2809 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 342 IPR003311 GO:0005634|GO:0006355
Psa4g2809 349 MobiDBLite consensus disorder prediction 1 26 - -
Psa4g2809 349 MobiDBLite consensus disorder prediction 11 26 - -
Psa4g2809 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
Psa4g2809 349 Pfam AUX/IAA family 73 340 IPR033389 -
Psa4g2809 349 Gene3D - 226 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2809 Psa-Chr4 225023761 225027628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2809 233 339 B3 DNA Binding Superfamily AT4G23980 30.841 2.62e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa4g2809 AUX_IAA 4.5e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2809 K14484 - gmx:100500373 551.977