Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2799 ATGACTAGAGTTTTCTTTGATTATACTTTTTTAGGTCGGATGAATTTCATGGATTCATCACACACTGCAACAGGGAAGGAAACAGAAGGTTTTGCAGAAATGAATCCAAACTCGTTTCCAGTTTACGATTGTAGTTTTACTTCAATGTTTTTCAACGACGCACAAGATCCGCAATCGATTGATGCATGTCTACCGGTTTCTACTACTGTTAACAACTTTGGTTCTGGGTTGGATCAATCTGAATTGAACACTGGTACTGAGTTAGGTGGTGAGTCTTCCAAAGACATTGTTGCGGTGGATCCTGAAAGTCCTGAAAACACTACTCATAGCACTGCTAAACCAACTTCAAAATACAAAGGGGTTTCAAGGCACAGATGGATGGGTAGATTTGAAGCACATCTATGGGATAACAACTGTAAACAAGAGGGTCGTGTCAGGAAAGGCCGACAAGTGTATTTGGGTGGGTTTGAGGATGAAGAAAATGCAGGAAGGGCTCATAATTTGGCAGCATTGAAGTACTGGGGACCAACAGCTACCACAAACTTTCCTGTTTCTGATTATGCAAAGGAATTGGAGGAGATGAAACATGAAGGAAAGCGAGAATTTCTTACTAAACTGCGAAGGAAAAGCAATGGTTTTGCTAGGGGAACATCCCAATATAGGGGAGTTACAAGGCACCACTACCGTGGTAAATGGCAAGCAAGAATTGGACGAGTTTCTGGAAACAAAGATATATACTTGGGAATATTTGATTCAGAAGAGGAAGCCGCAGAGGCTTACGATATTGCAGCTCTAAAATATAGAGGTGCAAGTGCTATAACAAATTTTGAGGCGAGTCGATATGATATGGAAGCTATATCGAAGAATCCTCTTCCAATTGCTCGAGCAACAAAACGCTTGAGACGTTCTCGACAATCAGAAAAGAATGCTCCTGTGACTAGAATTGATCAACCTCAATGCACAAATATGGATAGCAGCAACTTTCAGTCCACTGCTTCATTACCCTATGATCCTTTCCACCATTTTCATCCTCCCACCAATACAGAAATTGGCACAGTACAGTCTGCTGAAATTCCAACCAATGCAGGCACAATAATCGCAGGCAATGCCACCAGCATCTGA 1122 0.4171 MTRVFFDYTFLGRMNFMDSSHTATGKETEGFAEMNPNSFPVYDCSFTSMFFNDAQDPQSIDACLPVSTTVNNFGSGLDQSELNTGTELGGESSKDIVAVDPESPENTTHSTAKPTSKYKGVSRHRWMGRFEAHLWDNNCKQEGRVRKGRQVYLGGFEDEENAGRAHNLAALKYWGPTATTNFPVSDYAKELEEMKHEGKREFLTKLRRKSNGFARGTSQYRGVTRHHYRGKWQARIGRVSGNKDIYLGIFDSEEEAAEAYDIAALKYRGASAITNFEASRYDMEAISKNPLPIARATKRLRRSRQSEKNAPVTRIDQPQCTNMDSSNFQSTASLPYDPFHHFHPPTNTEIGTVQSAEIPTNAGTIIAGNATSI* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2799 373 CDD AP2 116 185 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 PRINTS Ethylene responsive element binding protein signature 259 279 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 Gene3D AP2/ERF domain 116 185 IPR036955 GO:0003700|GO:0006355
Psa4g2799 373 Gene3D AP2/ERF domain 218 279 IPR036955 GO:0003700|GO:0006355
Psa4g2799 373 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 96 319 - -
Psa4g2799 373 ProSiteProfiles AP2/ERF domain profile. 117 183 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 ProSiteProfiles AP2/ERF domain profile. 219 277 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 SMART rav1_2 117 189 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 SMART rav1_2 219 283 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 SUPERFAMILY DNA-binding domain 116 185 IPR016177 GO:0003677
Psa4g2799 373 Pfam AP2 domain 219 269 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 Pfam AP2 domain 116 175 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 96 319 - -
Psa4g2799 373 CDD AP2 218 279 IPR001471 GO:0003700|GO:0006355
Psa4g2799 373 MobiDBLite consensus disorder prediction 299 322 - -
Psa4g2799 373 SUPERFAMILY DNA-binding domain 218 278 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2799 Psa-Chr4 224096887 224099095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2799 213 302 AP2-EREBP Transcription Factor Family AT5G17430 39.796 1.99e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa4g2799 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2799 K09285 - gmx:100795280 331.257