LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g2796	ATGGATGCTACTCAAACAGAAAAAATATATGTTGCAGTTGGCTATGATGTTCTAGATGGATTTCAAACATTGGATTGGGCTCTCAAAAAATGGAATTCTCATCCAAATATTTCTATCATCATTTTACATGTCAAATACAACCCTTCCAATCATCATGTTTATACACTCCTTGGAAAACTCCCTGCAAAAGGTGCATGCGAAGAGAAACTAGAACGTATAAGGAACTATCAACAAAACATTATCAACAATTTGCTTTCCAAGTATATAGCTTTATGTGACAAAGTTCCAGCTGAAACATTTGAGGTTGAGAAATTTGATGAACCAATGCAAAATCTCACTATAGATTTGATCCATGGTCTTGGAATAACCAAATTGGTTATTGGATTTTCATTCATGAGACCTTCCATGAAATCGAAAGATGCCATGAACGGATTGTTCTACGTTCATCAGCACAAGCCTGATTTCTGTGAATTGTTCATCATCTGTGGAGGGAAGCAAGTTTCACCGAGAGTGAAAAATGATGAGATAACCATGGAGGATGATAGCGGTGTCAAGGTTGCAAAAATGCGAGATTATAAGACGAATTTTAGATATTGGATAGAGAGAATTTTCTGTGATAAAACTATTGATTCCAACCAAGGGTGTTCTAGCAGATCATCGACAAGTTCGGAGTCTCATATTGATCAAAATGAGTGGGAGCTTTATATCCGAGAAATCGATAGTTATTTTCAAGAGTTACTGTCTTTAAATATGGAGGAAGGAATTTGTGGACAAGACAATGATGATTCTTACTTTAGTCCAATTGAGCCATTTGTCCAACAACTTAAAAATTCTGATAATAAGAGTGGTGCAGAGAAATTTAAGATCCTCAGAGATAAACTGAAAGAAGCTTATGATACAATCCAAGTGAAAAGAAAAGAAGAAAAGGAGAATTTGGAGAGGCATGCAAAAGCTGAATGGGCTATTTATGTATCCAATCTTCGGGAAGAAGAACTTGAATATCTAAAAAGTGAAGAAGTGACACGAAAGGAAGAGGTAAAGAAGGAAGTAAATACAGAAAAAGAACAAATTCAAAAAATTAGAATGAATATTGAAGATAACGAGCAAAGTCTTGGATCAATGGAAGAGCTACAACTAGAGCTCCAAAGTAAACTTCATGATTCCACACTGGAAGTTTCAGAATGCGAAACCAAATTTGAGAATGTAATGGCTGAAAGGACAAAGATGTTAATGGAGATAGAGGAGCTAAGTAGACAAAGAAACGTGTTGAACAAAAGGATTATGTTTTTCAAAGAAAAAGTTGAAAAAGAAATATGCAATAAGCTAATAACGAAGAGTTGTTGTTTAGAAGAGTACACAGAGGAAGAAATCATCATGGCTACCAACAATTTTTCAGAATACTTAAGGTTGAAATCTGGTAGAAATTGGAGTAATGTTTATAGAGGAAACATTAATAACTCCAATGTTGCAATCAAGATGATTGATCCTACTCTTGCCTTGTCCCGAAAAGATTTCCAAGATAAGTTGATGTTTCTTGGTAATATTCGGCATCCTCATCTGGTTGCTGTATTGGGCTTCTGTTCGGACCCGAAATGCTTAGTTTTCGAATACATGCACAATGGTACCTTGGAAGAAGCCCTACTTTGCAAGACAAGAAGAAGGGTCATAAGCTATCAAGATTGCATAAGGATAGCCATAGAAGTTTGTTCTGGTCTGGGCTTTCTCAATACATTTCAGCCCAGATCCATCATTCATTGTCGCATTTCTCCATCCAACATCCTCCTAAATAAAAATCTTGTTGCAAAGGTGGCGGGGTTTGACCTTCATGGCTGCAATGAAGAATGTAACGTTGAGTCGGACATGAAGGCAATAGGGGTTTTGTTGTTGCATCTATTGACCGGAAGAGGAAATTGGGTGACAATTGATATGATAGCTTTTTTTGATGAGATTGGTGATGAATGGCCATTGGATGTTGCAAGAGAACTTCTGGACTTAGCAATAAGGTGCATTTCCAATGAAGAAATGAGCATAACAAGAGTTATGAAAGAACTCAATTCGATCAAAGGAAAGGGTTGTGACTCCATTAAAGTTCCTAACATTTTCCTTTGTCCAATCCTTCAGAAGGTAATGAGAAATCCACACATAGCAGCAGATGGATATTCTTATGAGCTAGAAGCAATAGAAGAGTGGTTGGATTCGGGAAATGAAATATCACCTAAAAGCTTGAGGCTCGACAATACATTACTTTTCCCGAATCATAACCTCCGTTCCCTAATACAGTACTGGCATAGTAACAGATCAGCTACAAAAAAATGA	2316	0.367	MDATQTEKIYVAVGYDVLDGFQTLDWALKKWNSHPNISIIILHVKYNPSNHHVYTLLGKLPAKGACEEKLERIRNYQQNIINNLLSKYIALCDKVPAETFEVEKFDEPMQNLTIDLIHGLGITKLVIGFSFMRPSMKSKDAMNGLFYVHQHKPDFCELFIICGGKQVSPRVKNDEITMEDDSGVKVAKMRDYKTNFRYWIERIFCDKTIDSNQGCSSRSSTSSESHIDQNEWELYIREIDSYFQELLSLNMEEGICGQDNDDSYFSPIEPFVQQLKNSDNKSGAEKFKILRDKLKEAYDTIQVKRKEEKENLERHAKAEWAIYVSNLREEELEYLKSEEVTRKEEVKKEVNTEKEQIQKIRMNIEDNEQSLGSMEELQLELQSKLHDSTLEVSECETKFENVMAERTKMLMEIEELSRQRNVLNKRIMFFKEKVEKEICNKLITKSCCLEEYTEEEIIMATNNFSEYLRLKSGRNWSNVYRGNINNSNVAIKMIDPTLALSRKDFQDKLMFLGNIRHPHLVAVLGFCSDPKCLVFEYMHNGTLEEALLCKTRRRVISYQDCIRIAIEVCSGLGFLNTFQPRSIIHCRISPSNILLNKNLVAKVAGFDLHGCNEECNVESDMKAIGVLLLHLLTGRGNWVTIDMIAFFDEIGDEWPLDVARELLDLAIRCISNEEMSITRVMKELNSIKGKGCDSIKVPNIFLCPILQKVMRNPHIAADGYSYELEAIEEWLDSGNEISPKSLRLDNTLLFPNHNLRSLIQYWHSNRSATKK*	772

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g2796	771	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	695	771	IPR013083	-
	Psa4g2796	771	SUPERFAMILY	Protein kinase-like (PK-like)	449	671	IPR011009	-
	Psa4g2796	771	Gene3D	Phosphorylase Kinase; domain 1	448	537	-	-
	Psa4g2796	771	Coils	Coil	291	311	-	-
	Psa4g2796	771	PANTHER	OS02G0152300 PROTEIN	4	764	-	-
	Psa4g2796	771	CDD	RING-Ubox_WDSUB1_like	701	739	-	-
	Psa4g2796	771	Pfam	Protein tyrosine and serine/threonine kinase	476	609	IPR001245	GO:0004672\|GO:0006468
	Psa4g2796	771	Gene3D	Transferase(Phosphotransferase) domain 1	544	684	-	-
	Psa4g2796	771	Coils	Coil	399	433	-	-
	Psa4g2796	771	PANTHER	U-BOX KINASE FAMILY PROTEIN	4	764	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g2796	Psa-Chr4	224040473	224043819	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g2796	3	768	U-box Gene Family	AT5G65500	41.697	0.0	572

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Psa4g2796		PK_Tyr_Ser-Thr	1.1e-20	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g2796	-		-	gmx:100795815	941.414

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