Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2752 ATGGAGATGCTAGACTTAAATAGGAGACAGCTCCTTGGTTGGGGAGACGGTTATTACAAAGGCGAAGATGACAAAGAAAAAGCTAAAAAAGTTATCTTGCCTGAACAACAAGCTCATCGCAATAAAGTCCTCCGTGAACTTAACGCCTTAATTTCCGGCTCATCTAGCTCAGATGATGTCGTTGACGAAGATGTCACCGACACTGAGTGGTTCTTTCTCACGTCGATGACACACTCCTTCGTCAACGGAAGCGGTTTACTGAGCCAGGCTTACTTTAATTCTTCCCCAGTATGGATCAACGATAGGCTTTCCATGTCCACATGTGAAAGAACCCGTGCAGCACATGTTCACGGGCTTCAGACTTTGGTATATATACCAGCACCGTCTTCAAACGGTGTCGTTGAGCTCGCATCTACTGAGATAATTCCACATAGCGCTGGTATAATGGAGAAGGTTCGTTTTTTGTTTGATTTCAATAATCCAGAAGCACGGTCTTGGCCGTTGAATTCCGCCGACAACGATCCTTCTTCCATGTGGTTGGATATCCCCGGCTCCGGTGGAATTGAAATTAGAGACTCCATCAACACTGTTAGTGCCGTCAGTGTAACGGCTTCAGCAAATGCAACAATCCCTAAAAAATCGCCGTTTGAAATTCACGGTGCTTCTACTACTCTACCGGAATCATCCACCACCGTTAATATTTCAACTGCTCAGCGCCAAATCCAGAATCAAAACCAGAACCAGAGCTTCTTTCCAAGAGAACTGAATTTTTCAGGTTCTTTCAAACCGGAATCCGGCGAGATTCTGAACTTTGGGGAGAGTAAAAAGAGTTCTTACAGCTCTGCCAATGGTAATTTCTTTTCCGGTCCGTCACCATTCGCTGCTAATGAAGAAAACAGAAAAAGAAGATCCCCGGTGTCTAGAAGTAGTATCGAGGACGGAATTCTTTCATTCAGTTCTGGCAAACTGTTACATGGTTCAACTATAAAATCCGGTGGCGGAGATTCCGATCATTCAGATCTGGAAGTTTCTGTGGTGAAGGAAACTGTGAGCAGCAGAGTTATCGAACCAGAGAAGCGGCCTCGGAAGCGAGGTAGAAAACCAGCCAACGGAAGAGAAGAACCCTTGAACCACGTGGAAGCAGAGAGGCAGCGACGGGAGAAACTGAACCAGAGATTCTACGCTTTACGAGCTGTGGTTCCTAATGTTTCTAAAATGGACAAAGCTTCGCTTCTTGGAGACGCGATTTCTTACATAAACGAGTTGAAATTGAAGCTGCAAGGGCTTGAATCGTCAAAAGATGAGTTGGAGAAAGAACTAGATACAACCCGAAAGGAACTAGAAATTGCAACTAAAAAACCAGTTCGGTTGAACGAAGAAGAAAAAGAGAAACCAGAAAACAACTCTAAGTTGATTGATTTGGACATAGATGTGAAAATCATGGGATGGGATGCTATGATTAGGATTCAGTGTAGCAAGAAGAATCACCCTGCTGCGAAATTAATGGCGGCTTTAAAAGAATTGGATCTTGATGTGAATCATGCTAGTGTTTCTGTTGTTAATGACTTAATGATTCAACAGGCTTCTATTAACATGGGAAGTAGATTTTACACACAAGAACAGCTTTTATCTGTTCTTTCTTCCAAAATTGGTGATACACAATGA 1665 0.4324 MEMLDLNRRQLLGWGDGYYKGEDDKEKAKKVILPEQQAHRNKVLRELNALISGSSSSDDVVDEDVTDTEWFFLTSMTHSFVNGSGLLSQAYFNSSPVWINDRLSMSTCERTRAAHVHGLQTLVYIPAPSSNGVVELASTEIIPHSAGIMEKVRFLFDFNNPEARSWPLNSADNDPSSMWLDIPGSGGIEIRDSINTVSAVSVTASANATIPKKSPFEIHGASTTLPESSTTVNISTAQRQIQNQNQNQSFFPRELNFSGSFKPESGEILNFGESKKSSYSSANGNFFSGPSPFAANEENRKRRSPVSRSSIEDGILSFSSGKLLHGSTIKSGGGDSDHSDLEVSVVKETVSSRVIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKLKLQGLESSKDELEKELDTTRKELEIATKKPVRLNEEEKEKPENNSKLIDLDIDVKIMGWDAMIRIQCSKKNHPAAKLMAALKELDLDVNHASVSVVNDLMIQQASINMGSRFYTQEQLLSVLSSKIGDTQ* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2752 554 MobiDBLite consensus disorder prediction 290 309 - -
Psa4g2752 554 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 422 IPR011598 GO:0046983
Psa4g2752 554 MobiDBLite consensus disorder prediction 350 383 - -
Psa4g2752 554 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 156 IPR025610 -
Psa4g2752 554 Coils Coil 419 453 - -
Psa4g2752 554 PANTHER MYC 4 551 IPR045084 GO:0003700|GO:0006355
Psa4g2752 554 SMART finulus 379 428 IPR011598 GO:0046983
Psa4g2752 554 CDD bHLH_AtAIB_like 370 446 - -
Psa4g2752 554 Pfam Helix-loop-helix DNA-binding domain 377 422 IPR011598 GO:0046983
Psa4g2752 554 PANTHER TRANSCRIPTION FACTOR MYC2 4 551 - -
Psa4g2752 554 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 442 IPR036638 GO:0046983
Psa4g2752 554 MobiDBLite consensus disorder prediction 352 383 - -
Psa4g2752 554 Gene3D - 365 453 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2752 Psa-Chr4 219359489 219362154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2752 5 551 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 48.951 7.05e-159 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g2752 bHLH-MYC_N 2.1e-35 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2752 K13422 - gmx:100790854 609.372