Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2751 ATGAAGATGATGAATGTGTTGAGTAAGAAGAAGCTTGGAGTGTTTTTGCAACTATGTTTCTTGCTATGTGCTTGTTCTGAGAAGACATTAAGAGAAGGATCGTCAACTTCTATAGTCAAGTTGAATACAGATGACCAACAACAGTTGGTTGTTGACAATGGCATTGTTTCTGTGACTTTGTCAAGACCTGAGGGGTACATCCTTGGAATATCATATAATGGAGTTGACAACATTCTTGAGTCTGAAAATAAAGATGATAGAGGGTACTTTGATGTTGTTTGGAATAAACCAGGGAAAACTGGTAATTTCTCGAGAATCCATGGAACAAACTTTTCAATTATTGCAGCTGATGAGAATATGGTGGAGATTTCATTTTTAAGAATATGGACACCTTCTATGAATGAAACAGATGCCCCTATTAACATAGACAAAAGATACATTTTCAGAAGTGGTGATTCTGGATTTTATTCGTACGTGATATTCGATCGACCCGAAGGAATGCCAGCAGTTGAGGTCGATCAAATCAGATATGTTTATAAACTCAATAAAGACATGTTTAAGTACATGGCATTATCTGATACGAGACAAAGAAGCATGCCAGCAATGAAAGATCGACTAACAGGTCAAAATTTAGCTTATCCAGAAGCTGTTTTATTAACTAAACCGATTGATCCACAATTTAGAGGAGAAGTGGATGATAAATATCAGTACTCATGCGAGAACACAGATAACAATGTTCATGGATGGATTAGTTTTGATTCGGATGAGCCCATGGGCTTTTGGTTGATCACACCAAGTAATGAGTTTCGAAATGGTGGGCCTATTAAACAAGATCTTACTTCTCATGTTGGGCCCATCACTCTTTCCATGTTTGTGAGCACACACTATGCTGGAAAGGAAGTGACAATGGCATTTGAAGATGGTGAAAGTTATAAAAAGGTTTTTGGTCCTGTTTTTGTATATCTTAACACTGATTCAAGTGAAAATGACAATTCAACCCTTTGGTCAGATGCTGTGCAACAGTTATCTAAAGAAGTTCAAAGTTGGCCTTATGATTTTCCTCAATCAAAAGATTATTTTCCACCAAATCAAAGGGGAATGGTGTTTGGAAGATTACTAGTTCAAGATAGGTACTTCAAAGGAGGGAGATTTCAATACACTAATGCTTATATTGGTCTTGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAAGGTTATCAATTTTGGACTCGAGCTAACGCGAAAGGATACTTCAAAATAGATAATATCGTGCCGGGTGACTATAATTTGTATGGTTGGGTTCCTGGATTCATTGGTGATTACAAATATAATGCTACAATCACCATCACTTCAGGTGGAGTCTTAAACTTAGATTCACTTATATATAATCCTCCGAGAAACGGACCAACTATTTGGGAAATCGGGATCCCAGATCGATTGGCTTCCGAATTTCATGTTCCAGACCCTTACCCGACTCTCTTGAACAAATTATACTCCGAACAACGCAAAGACAAGTTTAGACAATATGGATTGTGGGAACGTTACAGTGATATATATTCAGATGCTGATCTTGTTTACACTGTTGGTGTTGACAAGAATAAAGATTGGTTTTATGCTCAAGTTACAAGAATAACAGAAAACAAAACATATGAACCAACAACATGGCAGATTGTCTTTGAACATCAAAATGACATTATCACAGGAAACTATACATTACAACTAGCCTTGGCTAGTGCTTCTGATGCAAACTTAGAGGTTCGGTTCAATGATGCTGGTGTAGATCCGCCTCATTTTGCGACGGGGCGCATTGGAGGAGATAATGCCATAGCAAGACATGGAATTCATGGATTGTATTGGTTGTTTAGCATTGATGTTCCAAGTAATGTTCTTGTGAAAGGACAAAATGTCATCTATTTGAAGCAGTCAAGAGCTATTAATCCTTTTCAAGGAGTTATGTATGATTATATTCGGTTAGAACGACCACCAATAACTTGA 2004 0.3757 MKMMNVLSKKKLGVFLQLCFLLCACSEKTLREGSSTSIVKLNTDDQQQLVVDNGIVSVTLSRPEGYILGISYNGVDNILESENKDDRGYFDVVWNKPGKTGNFSRIHGTNFSIIAADENMVEISFLRIWTPSMNETDAPINIDKRYIFRSGDSGFYSYVIFDRPEGMPAVEVDQIRYVYKLNKDMFKYMALSDTRQRSMPAMKDRLTGQNLAYPEAVLLTKPIDPQFRGEVDDKYQYSCENTDNNVHGWISFDSDEPMGFWLITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEDGESYKKVFGPVFVYLNTDSSENDNSTLWSDAVQQLSKEVQSWPYDFPQSKDYFPPNQRGMVFGRLLVQDRYFKGGRFQYTNAYIGLALPGDAGSWQRESKGYQFWTRANAKGYFKIDNIVPGDYNLYGWVPGFIGDYKYNATITITSGGVLNLDSLIYNPPRNGPTIWEIGIPDRLASEFHVPDPYPTLLNKLYSEQRKDKFRQYGLWERYSDIYSDADLVYTVGVDKNKDWFYAQVTRITENKTYEPTTWQIVFEHQNDIITGNYTLQLALASASDANLEVRFNDAGVDPPHFATGRIGGDNAIARHGIHGLYWLFSIDVPSNVLVKGQNVIYLKQSRAINPFQGVMYDYIRLERPPIT* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2751 667 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 42 665 - -
Psa4g2751 667 CDD RGL4_N 42 330 - -
Psa4g2751 667 Pfam Polysaccharide lyase family 4, domain III 473 661 IPR029411 -
Psa4g2751 667 SUPERFAMILY Galactose mutarotase-like 43 330 IPR011013 GO:0003824|GO:0005975|GO:0030246
Psa4g2751 667 CDD RGL4_M 364 463 IPR029413 -
Psa4g2751 667 Gene3D - 41 342 IPR014718 GO:0030246
Psa4g2751 667 Pfam Rhamnogalacturonate lyase family 39 231 IPR010325 -
Psa4g2751 667 Pfam Polysaccharide lyase family 4, domain II 388 456 IPR029413 -
Psa4g2751 667 Gene3D - 470 662 - -
Psa4g2751 667 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Psa4g2751 667 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 42 665 - -
Psa4g2751 667 SUPERFAMILY Galactose-binding domain-like 470 662 IPR008979 -
Psa4g2751 667 Gene3D - 363 462 - -
Psa4g2751 667 CDD RGL4_C 475 662 - -
Psa4g2751 667 SUPERFAMILY Starch-binding domain-like 359 462 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2751 Psa-Chr4 219165483 219171919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2751 37 664 Polysaccharide Lyase AT1G09890 55.276 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2751 K18195 - gmx:100776664 1034.25