Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2748 ATGAGCACTATTACGTTTTCACATGCTAAGGGTTCTCTTCAAACTTTCATTGACTTACAAGATACTCAAACAAGACATCAAGCATCACACCTCTCCACCAAAGAAAACAATGTTGGAAATGTGATTGTTGCTCTTATGGCAGACCTTGCTCCTAAGACAAAGGTTCTTAGTGATGGTAAATGGAGTGAGAAAGAAGCTCCAATCCTAGTTCCAAGTGATATCACTAGCATCAAACTTGGTGACATCATACCAGTCGATGCTCGTCTTCTAGAAGATGATTCTTTAAGGGTTAACCAAGCAGCATTAACAGGAAAGTCACTCACAGTCGTTGGTATGTTAGCTAAGATTCTAATCATGTGTCTTATTCAACATCACAAATATTGCGATGAAATTGACAACATTTTAGTCATTTTGATTGGTAGAATTCTTATTGTTATGACAACAATTCTGTTTGTGTCAATCGCTATTGGTTCTCATAAATTTTCTGAACAAGGTGCTATTAAAAAAAGAATGACTGCCATTGAGGAAATGGTTGGTGTAGCCATTCTTGACAGTGGAAAGACAGAGACTTTTACCCTTAACAAGTTTCTCATTAATATGGACTTGATTGAAGTTTTTATTAAGGGTGTGTATAAGGAACATGTGATTCCTCTTGCTGCTAGGACTGCTAGGTTGGCCTCTTTCACTGAAGCTAACTCTAATTACTCCAAAGTTATGCTATACAACCCTTTTAGAGGGTGTATTAAAATTTGGAAAGGTTGGAATAGCTTCCACAACCTTGAGGACAAGGTTGGTCTTCATGGGGTGGCTAATGATACATGTCATATTTGGGTTCAATGTTTGCTGGCAATGCTTTAG 858 0.3765 MSTITFSHAKGSLQTFIDLQDTQTRHQASHLSTKENNVGNVIVALMADLAPKTKVLSDGKWSEKEAPILVPSDITSIKLGDIIPVDARLLEDDSLRVNQAALTGKSLTVVGMLAKILIMCLIQHHKYCDEIDNILVILIGRILIVMTTILFVSIAIGSHKFSEQGAIKKRMTAIEEMVGVAILDSGKTETFTLNKFLINMDLIEVFIKGVYKEHVIPLAARTARLASFTEANSNYSKVMLYNPFRGCIKIWKGWNSFHNLEDKVGLHGVANDTCHIWVQCLLAML* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2748 285 Gene3D - 181 195 IPR023214 -
Psa4g2748 285 Pfam E1-E2 ATPase 50 109 - -
Psa4g2748 285 Gene3D - 51 109 - -
Psa4g2748 285 PANTHER CALCIUM-TRANSPORTING ATPASE 109 226 - -
Psa4g2748 285 PANTHER CALCIUM-TRANSPORTING ATPASE 34 109 - -
Psa4g2748 285 SUPERFAMILY Calcium ATPase, transduction domain A 51 113 IPR008250 -
Psa4g2748 285 Gene3D - 34 50 - -
Psa4g2748 285 Gene3D - 110 180 - -
Psa4g2748 285 Gene3D - 196 226 IPR023299 GO:0000166
Psa4g2748 285 PANTHER PLASMA MEMBRANE ATPASE 109 226 - -
Psa4g2748 285 PANTHER PLASMA MEMBRANE ATPASE 34 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2748 Psa-Chr4 219139317 219140350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2748 51 225 Primary Pumps ATPases AT2G18960 43.515 1.59e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2748 K01535 - gmx:100804422 188.734